PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676786066
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 378aa    MW: 42976.3 Da    PI: 7.9904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676786066genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07220242123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++Cgk F+r  nL+ H+r H
  676786066 220 HYCQICGKGFKRDANLRMHMRAH 242
                68*******************99 PP
2zf-C2H212.40.00048341356621
                TTEEESSHHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHir 21 
                Cg++Fsrk+ L++H +
  676786066 341 CGTRFSRKDKLMSHVS 356
                **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-6218244No hitNo description
Gene3DG3DSA:3.30.160.603.0E-6220247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632220247IPR007087Zinc finger, C2H2
SMARTSM003550.0028220242IPR015880Zinc finger, C2H2-like
PfamPF128740.0025221240No hitNo description
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SMARTSM00355160271304IPR015880Zinc finger, C2H2-like
SMARTSM0035555309331IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNQEEHMNQG RLIINNGEGS MSCFSDTTSS SSIYMQPMTA ATKSSEDDDD ISISLLVNLS  60
TIQEKVHQIQ SMVSFYMISA NNNNQSSEST SSLAVTNIGS LVQEIITTAS SMMFSCQQLN  120
ISSNNSSNID NNQTADAIAM EFPPQEIDRD RVFMHESSTN LCDVQERGHI SFLNQTTHNL  180
DWYGTQTINP KKDHHRSKSR SGDYEIVELG VADLLAKYTH YCQICGKGFK RDANLRMHMR  240
AHGDEYKTRE ALISPAGRDK NVEYSSTRHY YSCPQQGCRW NQRHEKFQPL KSVICAKNHY  300
KRSHCPKMYM CRRCNVKHFS VLSDLRTHEK HCGDIKWVCS CGTRFSRKDK LMSHVSLFLG  360
HSPAHVAPQQ QPPMITPK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676786066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665869.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A078CCG30.0A0A078CCG3_BRANA; BnaA04g16510D protein
STRINGBra002438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-172C2H2 family protein