PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676785752
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 690aa    MW: 75016.8 Da    PI: 6.9118
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676785752genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.71.5e-196861898
      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
               ++++P +rikki+++dedv +i+  +P l+ska elf+ +l  r++  + +   +t++   ++++v + +ifdfl div +
  676785752  6 QTRFPATRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCNRTYDVTLSRGAKTVNAVHLKQCVDKCNIFDFLRDIVGK 86
               689**************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.5E-25271IPR009072Histone-fold
PfamPF008081.1E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.29E-181887IPR009072Histone-fold
Gene3DG3DSA:3.90.550.107.4E-34254385IPR029044Nucleotide-diphospho-sugar transferases
CDDcd041981.63E-63254454No hitNo description
SuperFamilySSF534485.91E-30257477IPR029044Nucleotide-diphospho-sugar transferases
PfamPF128046.5E-8259378IPR025877MobA-like NTP transferase
Gene3DG3DSA:3.90.550.107.4E-34421489IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF534485.91E-30533570IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:3.90.550.107.4E-34546565IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:2.160.10.101.9E-20566679No hitNo description
CDDcd046527.34E-28601681No hitNo description
SuperFamilySSF534485.91E-30607657IPR029044Nucleotide-diphospho-sugar transferases
PfamPF001323.5E-4617652IPR001451Hexapeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MKKKLQTRFP ATRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCNRT YDVTLSRGAK  60
TVNAVHLKQC VDKCNIFDFL RDIVGKVPDL CGSEAEDRSA TKRRKVVDES SCNDEDMTTT  120
EMHEAKHTGG GRGKRGRGRG RGSGRTGNGQ PLKFEDDLAD ASPESSRSQS PEKWSLSHDV  180
ASHKNNHSSN SELKVRNFDL NVGLDENGHS PTPVERGLEG RADWPLFGVV KEMKIDPDQQ  240
ASANEDENYD EESLDEEVPK ALLPVANRPV LSYVLDLLES SNLKDLIVVV EGEEAALKVG  300
GWISSACVDR LHVEVAAVAE NVGTAGALRA ISHHLTAKDI LIVSGDIVSD ISPGAVAATH  360
RRHDAAVTAM LCAEPVSGPS ESGGAGGKDK TKKPACYDII ALDSSKQFLL YIATGAEIKK  420
DTRIKKSILC AAGKMEIRSD LMDSHIYAFK RSVLQEVLNQ KPTFRCLKQD VLPYLVRTQL  480
RSDVFAEEKA VEDNGNGNGK NNMQTNEVVL SQILSNASLP SFHQVYESGL NSRKTHKCCV  540
YIADESKYCV RLNSIQAFMD VNRDVIGDAN HLSGYSFSAH HNIVHPSAEL GSKTTVGPHC  600
MLGEGSQVGD KCSVKRSVIG RHCRIGSNVK VVNSVVMDHA TIGDGCSIQG SVICSNAQLQ  660
ERVALRDCQV EAGYLVCAGG EHKGETFARK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6caj_I6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6caj_J6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6ezo_E6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6ezo_F6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6k71_E6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6k71_F6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6k72_E6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6k72_F6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6o81_I6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6o81_J6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6o85_I6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6o85_J6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6o9z_I6e-4425468819444Translation initiation factor eIF-2B subunit gamma
6o9z_J6e-4425468819444Translation initiation factor eIF-2B subunit gamma
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131141RGKRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676785752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4876270.0DQ487627.1 Arabidopsis thaliana clone 0000004280_0000003560 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442260.10.0PREDICTED: translation initiation factor eIF-2B subunit gamma-like
TrEMBLA0A3P5ZXT30.0A0A3P5ZXT3_BRACM; Uncharacterized protein
STRINGBra020041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM800422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.11e-108NF-YC family protein