PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676785062
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 282aa    MW: 31089.7 Da    PI: 8.7601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676785062genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07103126326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 e C+ f+ +G C++Gd C F+Hg
  676785062 103 GEVCPEFRNGGDCSRGDECGFSHG 126
                589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-599130IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836101128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4103128IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5104126IPR000571Zinc finger, CCCH-type
SMARTSM003563136159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDVEHHNSGH IGRPTVDIPS RKHFSSAKSP SSASSPRRDD KDQKDYCYVS DSDDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRYH YTGEVCPEFR NGGDCSRGDE  120
CGFSHGVFEC WLHPGRYRTE ACKDGKHCKR KICFFAHSPR QLRVLPPPES FVSGGGGSAL  180
SSPASVLSNK NNGCCMFCSH SPTSTLLGLA RSPSSSPPLS PANKAATLSR LSRRCSAVTY  240
KESHGSTLRG FLVISCYHAG SHCVDACLIK AEQPSSPSSA VA
Cis-element ? help Back to Top
SourceLink
PlantRegMap676785062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608781.11e-128PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW21e-114C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A0D3E6F31e-127A0A0D3E6F3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QGN21e-127A0A3N6QGN2_BRACR; Uncharacterized protein
STRINGBo9g059770.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-107C3H family protein