PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G44260.1
Common NameAtTZF5, K9L2.1, TZF5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 381aa    MW: 42057.8 Da    PI: 8.2315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G44260.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-09103126326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   e C+ f+r G C++Gd C FaHg
  AT5G44260.1 103 GEVCPEFSRHGDCSRGDECGFAHG 126
                  589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-599130IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-4100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136101128IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6104126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5104128IPR000571Zinc finger, CCCH-type
SMARTSM003562.5136159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000293anatomyguard cell
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001185developmental stageplant embryo globular stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDVEHHKSGH ISRPTVDIPP RKLLSSAKSP SSVSSPLRDY KEQKDYCYDS DSEDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRFH YTGEVCPEFS RHGDCSRGDE  120
CGFAHGVFEC WLHPSRYRTE ACKDGKHCKR KVCFFAHSPR QLRVLPPSPE NHISGGCGGS  180
PSSSPASVLS NKNNRCCLFC SHSPTSTLLN LSRSPSSSPP LSPADKADAF SRLSRRRTAV  240
LNELISSLDS LSLTEALAAS SSSPVTMPIS TATMIASSNL SSNHHHHRLP PWLDVGDRDL  300
QLQQSSPLRF ALSPSSTPSY LHGQLQPPPS SFFGDEFTPR GGRLSDFSVA AAAAAQARDK  360
NSFEVGSSGD LDLGWVNDLL T
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.209400.0bud| seed| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306944830.0
Genevisible249065_at0.0
Expression AtlasAT5G44260-
AtGenExpressAT5G44260-
ATTED-IIAT5G44260-
Function -- GeneRIF ? help Back to Top
  1. AtTZF4, 5 and 6 affect seed germination by controlling genes critical for abscisic acid (ABA) and gibberellic acid (GA) response.
    [PMID: 23421766]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G44260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G44260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114750.0AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2.
GenBankAY0349160.0AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankAY1425420.0AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199239.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9FKW20.0C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A178UDC10.0A0A178UDC1_ARATH; TZF5
STRINGAT5G44260.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Representative plantOGRP11701644
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. De Paepe A,Vuylsteke M,Van Hummelen P,Zabeau M,Van Der Straeten D
    Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis.
    Plant J., 2004. 39(4): p. 537-59
    [PMID:15272873]
  4. Overvoorde PJ, et al.
    Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana.
    Plant Cell, 2005. 17(12): p. 3282-300
    [PMID:16284307]
  5. Khanna R, et al.
    Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation.
    Plant Cell, 2006. 18(9): p. 2157-71
    [PMID:16891401]
  6. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  7. Usadel B, et al.
    Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes.
    Plant Physiol., 2008. 146(4): p. 1834-61
    [PMID:18305208]
  8. Pomeranz M,Lin PC,Finer J,Jang JC
    AtTZF gene family localizes to cytoplasmic foci.
    Plant Signal Behav, 2010. 5(2): p. 190-2
    [PMID:20173417]
  9. Bogamuwa S,Jang JC
    The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in light-, abscisic acid- and gibberellic acid-mediated regulation of seed germination.
    Plant Cell Environ., 2013. 36(8): p. 1507-19
    [PMID:23421766]
  10. Bogamuwa S,Jang JC
    Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules.
    PLoS ONE, 2016. 11(3): p. e0151574
    [PMID:26978070]