PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676784632
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 811aa    MW: 89268.3 Da    PI: 6.5137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676784632genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53201471128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                +ppGfrFhPtdeel+++yL kkv ++++++  +i++vd++k+ePw+Lp+k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd+e++s+ +++l
  676784632  20 MPPGFRFHPTDEELITYYLLKKVLDSNFSC-AAISQVDLNKSEPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSkTNSL 118
                79****************************.88***************99999****************************************9856677 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 g+kktLvfykgrapkgek+ Wvmheyrl
  676784632 119 LGMKKTLVFYKGRAPKGEKSCWVMHEYRL 147
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-6017172IPR003441NAC domain
PROSITE profilePS5100557.40620172IPR003441NAC domain
PfamPF023658.0E-2821147IPR003441NAC domain
Gene3DG3DSA:1.25.10.108.3E-10284706IPR011989Armadillo-like helical
SuperFamilySSF483717.3E-13302388IPR016024Armadillo-type fold
PfamPF105085.3E-10424728IPR01953826S proteasome non-ATPase regulatory subunit 5
SuperFamilySSF483717.3E-13457519IPR016024Armadillo-type fold
SuperFamilySSF483717.3E-13562709IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043248Biological Processproteasome assembly
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MDIDVFNGWE RSRFEDETIM PPGFRFHPTD EELITYYLLK KVLDSNFSCA AISQVDLNKS  60
EPWELPEKAK MGEKEWYFFT LRDRKYPTGL RTNRATEAGY WKATGKDREI KSSKTNSLLG  120
MKKTLVFYKG RAPKGEKSCW VMHEYRLDGK FSYHHITSSA KDEWVLSKVC LKSSVVSRET  180
KLFSTSSVSV AGEFSSGVSC SSSAGSVIAP IIDAFATEHV SCFSNTSAAH ADASFPTYIP  240
APLPSLPRQA RRIGDDVAFG QFMDLGSSGQ FNIEATFLPN LPSLPPTVLP PPPQSFATYG  300
GSAPVLQAGL KADSAVVKSL ACKTVTCLLE NRDANDVSPV QVIVSNGIYP LLLEYIIYSD  360
DEVAHAASET IQSLARFPDA MVWLLNVFHF GSVASYFTPF IPATQTCFFS QSVIFPAETN  420
DPTHLGNLAA RSSSLARVRV LSLIVKLFSI SPLVASAIKN SGLLDLLEGE MKGTKDTLVI  480
LNVLELYYEL MEVEHSSEFV PQTSLIQMLC SIISGTSMDL FLKLRAMMIS GRLLLRDNIY  540
NTVDEACVKA LISAIDASLE SPEMNDTDAQ EAALDALGQI GSTTKGANLV LSTTPPAARH  600
VVASAFDRNA HGKQLAALHA LAYIAGETRP KSSRIVDGKA EESLRCLIYD VAAQSTKLTP  660
SGLFLSVLQQ SSEIRLAGYR TLAALVARPW GLMEIMSKEE IINIVTDATT ETAKIGKLRK  720
NPLASHMSHW TSFFLDLFAL TPTYLYILDS AMEARYNCCK SIHEAFLCSN FVDDPRRLKT  780
GEKLQEAVRN GPYMSKKYRD ARPEVMMAEG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-4881692165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676784632
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274310.0AK227431.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-08-B14.
GenBankBT0064900.0BT006490.1 Arabidopsis thaliana At3g15180 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493238.10.0PREDICTED: uncharacterized protein LOC108863342
TrEMBLA0A3P5YXQ00.0A0A3P5YXQ0_BRACM; Uncharacterized protein
STRINGBra027274.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.11e-143NAC family protein