PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676784164
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 277aa    MW: 31163.8 Da    PI: 5.3165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676784164genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-102032431055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  676784164 203 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 243
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14194259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12198252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-10202247No hitNo description
PfamPF000107.7E-8203243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEHWLRRDES SSYSAGHSGY YTVMAPRERN NNEMEDVTIN TNLYLVGEET SECDVGEYSG  60
KSLLTLETAE ENQDDNILHS EISLATKDDQ KMFNACESSK KRSRAIPIDK NKRASKARRT  120
QKIMEMSDDN NNSGEEEQTV KAAGKRKTKP LKLQKTCCSD DESNGGDTSS CKEGGEDPTA  180
LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK  240
FLQLQIKLLS SDDLWMYAPI AYNGMDIGID MKLNSLI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676784164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123214.11e-161PREDICTED: transcription factor bHLH84 isoform X2
SwissprotQ7XHI91e-141BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A0D3E2W11e-157A0A0D3E2W1_BRAOL; Uncharacterized protein
STRINGBo9g022600.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-126bHLH family protein