PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783642
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 466aa    MW: 51174.9 Da    PI: 7.0765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783642genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73.1e-114469126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C+ff+rtG+C yG++C+++H+
  676783642 44 PGERDCQFFLRTGQCGYGNSCRYNHP 69
               5789*********************9 PP
2zf-CCCH36.58.2e-1290114327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f++tG CkyG++Ck++H++
  676783642  90 QPDCEYFLKTGACKYGATCKYHHPK 114
                789********************96 PP
3zf-CCCH32.51.4e-10135158326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++ C+++++tG C++G  CkF+H+
  676783642 135 EKSCPYYMQTGMCRFGVACKFHHP 158
                667********************8 PP
4zf-CCCH391.3e-12276299427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++Crf++ tGtCkyGd Ck++H++
  676783642 276 AECRFYMNTGTCKYGDECKYSHPK 299
                79********************96 PP
5zf-CCCH34.53.4e-11319345127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C +f ++G+CkyG++CkF H++
  676783642 319 PGQPACGNFKAYGFCKYGANCKFDHPM 345
                57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8124371IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-64370IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-64771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-44968IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.65287115IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-692115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-493113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6131161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798132160IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5132159IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4137157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6270301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079272300IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-8273299IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-6278300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6315344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324318346IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6318345IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8320345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4324343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSETQQVQNT TGSVRSSEKL EDSFRRMKVN EENMEQSSPY PDRPGERDCQ FFLRTGQCGY  60
GNSCRYNHPL THLPQGVFYH RDELPERIGQ PDCEYFLKTG ACKYGATCKY HHPKDRNGAG  120
PVLFNVLGYP MRQGEKSCPY YMQTGMCRFG VACKFHHPHP QTHNGQATTY GMSSFPPVGF  180
PYAGGVTMMS LPPATYGVMA PPATYGAMPR PQVPHPQAYM PFMVAPSQGL PPPQGWPTYM  240
PGSNPIYNVT TQPDSSSSAS VPVAVTSHHH NFSEKAECRF YMNTGTCKYG DECKYSHPKE  300
RMIPSPPNLL NPIVLPARPG QPACGNFKAY GFCKYGANCK FDHPMPLNPY DNTGLTMPSL  360
PTAYAPPVST HLRISPPPSR SDSTALSNGN KPAAENHTLE TEKQDGRSDK SEVEQDPSQL  420
SRSDSTALSN GKSDAESPSS ETTKQDDSPS QPDNSGKQED ASDNAS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783642
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410430.20.0zinc finger CCCH domain-containing protein 26
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLM4CMV50.0M4CMV5_BRARP; Uncharacterized protein
STRINGBra005543.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2