PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783504
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 1571aa    MW: 180896 Da    PI: 7.9518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783504genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.2e-10502526327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 e Cr+++r+G C+yG +Ck++H+p
  676783504 502 VEDCRDYLRNGSCRYGRNCKYNHPP 526
                699********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-5499526IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5500526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699500527IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7502526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5505524IPR000571Zinc finger, CCCH-type
SMARTSM003560.51541568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.258541569IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718578605IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5579604IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6580602IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4581602IPR000571Zinc finger, CCCH-type
PfamPF007522.5E-23863960IPR006085XPG N-terminal
SMARTSM004858.9E-34863961IPR006085XPG N-terminal
Gene3DG3DSA:3.40.50.10101.8E-588631057IPR029060PIN domain-like
CDDcd098573.35E-1228631068No hitNo description
SuperFamilySSF887231.7E-638641088IPR029060PIN domain-like
PRINTSPR008531.9E-28886900IPR006084XPG/Rad2 endonuclease
PROSITE patternPS008410933947IPR019974XPG conserved site
PRINTSPR008531.9E-28935954IPR006084XPG/Rad2 endonuclease
PRINTSPR008531.9E-289991016IPR006084XPG/Rad2 endonuclease
SMARTSM004841.5E-1910001070IPR006086XPG-I domain
PfamPF008673.6E-2110011088IPR006086XPG-I domain
PROSITE patternPS00842010031017IPR019974XPG conserved site
PRINTSPR008531.9E-2810201040IPR006084XPG/Rad2 endonuclease
SuperFamilySSF478074.19E-2410741195IPR0200455'-3' exonuclease, C-terminal domain
SMARTSM002791.5E-610751108IPR008918Helix-hairpin-helix motif, class 2
CDDcd099089.36E-3410761147No hitNo description
Gene3DG3DSA:1.10.150.208.7E-810761120No hitNo description
PRINTSPR008531.9E-2810781093IPR006084XPG/Rad2 endonuclease
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1571 aa     Download sequence    Send to blast
MNQAIQIRDH KELEAVIREN LQQHRLRVRD AEMQHETESR FQQEKRGQAL DSRVKIMNKN  60
FTVCHYDDTE SIQISQKKGD EDERENSINS RPEKRVAKLN VIFIDWIQRT ASNRFQITYM  120
DVQSQAKFIP DSIERFEDLS VDAEDTLHEQ IERQRREADQ DNLHQQSNDK RKAYDQQNME  180
QERDTIEKKG REIRFRLDQF FNRQKKKKEQ LPAQQQQKQE MKSQEQEEFT QQQQNKSPPP  240
PQKQQSLVSQ FHLYPLVEKL TDAVETGTRD TNSDALVNEL SSQFNKCQQL LNSISGSLGS  300
TTMTASGQKR KLEESEKLLQ QRREKREKEK TRNGSSDKIE KKLIREQSRD PWKNPRDKGN  360
LMVELIGVAK EIQVHGKRKG DEIRIRGGEN VMLELIGGQG ESDGRTDRSR ERDPSSREAE  420
RGRNPDSGRR ECYVRTDRSH ERDPRSWEAR RVRKLEQEVT TLFFTRDCHY SKTEPNRFSQ  480
EIATQRRHEL AQSSENTVCT RVEDCRDYLR NGSCRYGRNC KYNHPPKIIN VIVPTSRFPV  540
RIGVQDCEDY LDTSRCRYGM TCLLNHPPDR VSPVRPMRSS RTICKFFQSG NCNKGSDCDY  600
LHLKDTAPMR QARERDPRER LQDASVVAGN KRMRIEKREG NIARRRRIEG EEIDQEKKET  660
QNSWRRQAQD NTQRQNSERS PRRETEESVE ERRMKEQEQA DMERQVKEAE EKAQEQQRRD  720
TEREKEQLQA QQQQEMKSQE QEEFTQQQQQ ESPSPPQQKQ QPLVSQFHLY PLVEKLTDAV  780
ETGTRDTNSD ALVTELSNQF NKCQQRLNSI SGSLGSKPMT GSGEKRKLEE GEKLLQQRRC  840
KVDHEMGFYY IVLPIKLEEE AEMGIQGLLP LLKSIMVPIH INELEGCTVA VDTYSWLHKG  900
ALSCSRELCK GIPTTRHIQY CMHRVNLLRH HGVKPVLVFD GGPLPMKLEQ ENKRARSRKE  960
NLARALEHEA NGNSSASYDC YQKAVDISPS IAHELIQVLR KENVDYVVAP YEADAQMTFL  1020
AITKQVDAII TEDSDLIPFG CPRIIFKMDK FGHGVEFQAS NLPKNKELSL SEFSSQMLLE  1080
MCILSGCDYL QSLPGMGLKR AHTLITKFKS YERVIKHLKY STVSVPPLYE ESFKKAMLTF  1140
KHQRVYDPKA EDVVHLLIKK HILIDSLTSF TSMPQHIAKG IALGQLDPFT QLPFQAESVT  1200
STLAVDNISR PKSFKPENLK KKLELPVQKN LLTKYFCILP CFASLEAKRK FKAPRISPMS  1260
LTSTEESPST PEDNATDVDA PSSETTNESP VYSSGENTSK ATEKSESPDN DAMERNHNDL  1320
DHKYVEQQVE RPKTDNLKVV VRSKYFKQKQ DDKSLKQSIP CLNECSMVGQ RKTVNTLINK  1380
SSASRREESD RAIATSSCFH QEPIYNDQEA AKEASFSAIN DVAKRTINIH EIHHLIDEEQ  1440
NPSAQILSTF SSPENVIPLS SIATISFCGA ATGKRKLDSV ENLHKENMNP KHMRMEEADP  1500
AVNAETSFET DDVEKFGSNI SHIGHYSEIA EKSVERFVSA ISSFRYSGSG SRASGLRAPL  1560
KDIRNTCPSK G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3qea_Z4e-7186311871331Exonuclease 1
3qeb_Z4e-7186311871331Exonuclease 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208RQKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783504
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-12zinc finger protein 1