PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783386
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 539aa    MW: 60697.6 Da    PI: 9.4352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783386genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.45.9e-141572381298
                HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                k+   ++p  f+ +h +g +e +++ +l++  s  +W++k+  + ++    lt GWkeF+ a++L+ gD+v+F+ ++++ f  +v+vf 
  676783386 157 KKEKKTIPVAFCFKHvEGRSEYKTMAKLRSdASEITWKLKV--EDGR---KLTHGWKEFALAHDLRIGDIVIFRQEKDMAF--HVTVFG 238
                556679**********777777789999986888*******..4444...39**********************7777777..999986 PP
2B378.19.5e-25284373697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +++++l+ +rl lp +f++++g++++++ +++l +e+g sW+++l+ +++ g++++t+GW++F++angL++g +++Fkl++ ++++lv++ +
  676783386 284 VTPSSLRDDRLNLPMSFVRANGLETRCG-EIVLLTEKGTSWTLNLKRKNSCGTMYITRGWRRFCSANGLRAGSVCTFKLIQ-TGGTLVLRKC 373
                689999*****************99887.****************98888888***************************9.7777777665 PP
3B355.69.7e-18434531199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f++ +++ ++lk++ l lp +f++ hg+++e  +++t+ d++g +W+  l+  r +++r+ l +GWk+F kan ++ g++++ kl+++ ++++v+ +++k
  676783386 434 FVTLTLKLSNLKKSKLFLPIRFTRMHGINTE--TKMTMLDKNGVKWSTDLRSeRSGGDRIKLVGGWKGFFKANCVDIGESIIVKLIWEGDKSCVLEFCSK 531
                6677788999*****************9954..58***************984555555*****************************999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.96E-11137237No hitNo description
PROSITE profilePS5086311.702146240IPR003340B3 DNA binding domain
SMARTSM010191.7E-11149240IPR003340B3 DNA binding domain
PfamPF023622.1E-9157237IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-15162247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-21179252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-23276373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-22278375IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.354279376IPR003340B3 DNA binding domain
SMARTSM010191.5E-29279376IPR003340B3 DNA binding domain
PfamPF023622.5E-23284373IPR003340B3 DNA binding domain
CDDcd100177.91E-24284371No hitNo description
Gene3DG3DSA:2.40.330.102.9E-15426530IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-17430527IPR015300DNA-binding pseudobarrel domain
CDDcd100178.93E-14433529No hitNo description
PfamPF023621.5E-16434531IPR003340B3 DNA binding domain
SMARTSM010191.3E-23434532IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605434532IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MEQGKNMTLP VVFKGANYLV WSRLTKNALG GRGLWSHITS SEAPRQTTQG EDGKELMVAT  60
DEDKWSQEDQ LAILTNLHQI LRLQKFRVSK LDVEAGKWVV VSDIGDRVLF IRDLEQMYTS  120
CSAKELPDDS GLSGSSIFFT CMSGKLSSLQ TKMRLAKKEK KTIPVAFCFK HVEGRSEYKT  180
MAKLRSDASE ITWKLKVEDG RKLTHGWKEF ALAHDLRIGD IVIFRQEKDM AFHVTVFGPS  240
CCEIQYGSCL DDKNKLGKIQ SNKKVKKNPA EYSSLDYSCY GANVTPSSLR DDRLNLPMSF  300
VRANGLETRC GEIVLLTEKG TSWTLNLKRK NSCGTMYITR GWRRFCSANG LRAGSVCTFK  360
LIQTGGTLVL RKCPSSTYSE DSEDSEEDCS VADEIKSLTT ESNSKKESNQ DEKSFNKPRS  420
IWKASSSSPS QNLFVTLTLK LSNLKKSKLF LPIRFTRMHG INTETKMTML DKNGVKWSTD  480
LRSERSGGDR IKLVGGWKGF FKANCVDIGE SIIVKLIWEG DKSCVLEFCS KVKQERNCI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436172.10.0PREDICTED: putative B3 domain-containing protein REM15
SwissprotO230764e-96REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A397YDE01e-179A0A397YDE0_BRACM; Uncharacterized protein
STRINGBra032078.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.15e-91B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]