PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676782592

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 426aa MW: 46675.3 Da PI: 10.215

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676782592	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.5	2.9e-13	347	399	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ k+ + 676782592 347 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKTQK 399 79***************************************877666666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-12	343	408	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	345	396	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-9	347	396	No hit	No description
Pfam	PF00170	4.3E-11	347	400	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-12	347	404	No hit	No description
CDD	cd14707	6.90E-24	347	399	No hit	No description
PROSITE pattern	PS00036	0	350	365	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MAVRVEVKGK KGLIRFVFKK VMGTHINFNN LDGDDSGGNG SNNNQSKPPL ARQSSLYSLT 60 FDELQSTLGE PGKDFGSMNM DELLKNIWSA EETQAIMTTT SSIAAVQPSS GCVVPGGNLL 120 QRQGSLTLPR TLSQKTVDEV WKNLVSKESC NGNSGTDAPE RQQTLGEMTL EDFLLRAGVV 180 KEDFDSNNQN SSLGFYANNG ASAALGFGFG QPNQNNISFN GNNNSMILNQ APGLGVKVGG 240 TMQQQHHHQP HQQQQLQQPH QRLPPTIYPK QANVTFAAPV NIVKKGLYEA PANNNSGFAT 300 MGGGGVTVAS TSPGTSSAEN NAWSSPVPYV FGRGRRSNTG LEKVVERRQK RMIKNRESAA 360 RSRARKQAYT LELEAEIENL KQLNQDLQRK QAEIMKTQKN ELKETSKQRP WLAKTQCLRR 420 TLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MAVRVEVKGK KGLIRFVFKK VMGTHINFNN LDGDDSGGNG SNNNQSKPPL ARQSSLYSLT  60
FDELQSTLGE PGKDFGSMNM DELLKNIWSA EETQAIMTTT SSIAAVQPSS GCVVPGGNLL  120
QRQGSLTLPR TLSQKTVDEV WKNLVSKESC NGNSGTDAPE RQQTLGEMTL EDFLLRAGVV  180
KEDFDSNNQN SSLGFYANNG ASAALGFGFG QPNQNNISFN GNNNSMILNQ APGLGVKVGG  240
TMQQQHHHQP HQQQQLQQPH QRLPPTIYPK QANVTFAAPV NIVKKGLYEA PANNNSGFAT  300
MGGGGVTVAS TSPGTSSAEN NAWSSPVPYV FGRGRRSNTG LEKVVERRQK RMIKNRESAA  360
RSRARKQAYT LELEAEIENL KQLNQDLQRK QAEIMKTQKN ELKETSKQRP WLAKTQCLRR  420
TLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676782592

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001322564.1	0.0	abscisic acid responsive element-binding factor 1
Refseq	NP_564551.1	0.0	abscisic acid responsive element-binding factor 1
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A178WH34	0.0	A0A178WH34_ARATH; AtABF1
STRING	fgenesh2_kg.1__4055__AT1G49720.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]