PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782526
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 333aa    MW: 36762.6 Da    PI: 9.9568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782526genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08757348
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                      W+ eE++ + +a++++  +      +W++  ++++ +++l+q+k ++q +l
        676782526  7 TWSREEEKSFENAIAMHCVEevitedQWRKMVSMVP-TKSLEQVKKHYQLLL 57
                     6****************999****************.************875 PP
2Myb_DNA-binding22.82.1e-071581951047
                      HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +l++ + +++G+g+W++I+r    +Rt+ q+ s+ qky
        676782526 158 KLFLLGLEKFGKGDWRSISRNYVITRTPTQVASHAQKY 195
                      6899999****************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.0E-5459IPR001005SANT/Myb domain
PfamPF002491.6E-6756IPR001005SANT/Myb domain
CDDcd001676.59E-7757No hitNo description
SuperFamilySSF466892.3E-8864IPR009057Homeodomain-like
PROSITE profilePS500906.284857IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.3E-8129195IPR009057Homeodomain-like
PROSITE profilePS5129410.843130200IPR017930Myb domain
SuperFamilySSF466896.53E-12132201IPR009057Homeodomain-like
SMARTSM007170.0044134198IPR001005SANT/Myb domain
PfamPF002493.0E-6158195IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.1E-11158198IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MESVAVTWSR EEEKSFENAI AMHCVEEVIT EDQWRKMVSM VPTKSLEQVK KHYQLLLEDV  60
KAIENGQVPL PRYQRKGDEA AAAAAAATSP ANRDCHSSGG SGSSEKKPNQ GISGINSSNG  120
GGRSGSRPEQ ERRKGIPWTE EEHRLLLLIL LLESLKKKLF LLGLEKFGKG DWRSISRNYV  180
ITRTPTQVAS HAQKYFIRLN SMNRDRRRSS IHDITTVNNQ APAVTGQQQQ QQQQVVKHRP  240
AQPQTQPQPQ TQQHHPGATM AGLGMYGGAP VGQPIIAPPD HMGSAVGTPV MLPPPMGSHH  300
HHHHHHLGVA PYAVPAYPVP PIPQQHQAPS TMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-128771177RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869061e-164AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195281e-164AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248621e-164BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640827.11e-177transcription factor MYBS1-like
TrEMBLA0A397YU191e-176A0A397YU19_BRACM; Uncharacterized protein
TrEMBLA0A3P5YCF31e-176A0A3P5YCF3_BRACM; Uncharacterized protein
STRINGBo6g018000.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-131MYB family protein