PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782186
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 499aa    MW: 54865.3 Da    PI: 7.0432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782186genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08317364455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  676782186 317 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 364
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16311377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-9311368No hitNo description
PROSITE profilePS5088815.37313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16313378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5317364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDNELFMHTE LPPPPEMAVH FEQPSSSSAM LNWALMDPNL ARNSPPQDCF PWEKSTQQQQ  60
QQQSIFDSAL SSLVSSPTPS NSNFSGGDGF IIRELIGKLG NIGNSSGEIY GGATMGNNNG  120
KVSRSASCYA TPMSSPPPPM MNRTTPLTEF SGDPGFAERA ARFSCFGSRS FNGRTNSGIP  180
VNNGKMINSG KLTRVSSTPA LNALASPMMI PAGDSTPKLP GEFSRKRKSV SKGKSKENPL  240
STASPSPTFS KTAERKGDWD GKVSKVSQEE KGGKRRREDQ EEEEEEEEGN KSNNTKPPEP  300
PKDYIHVRAR RGQATDSHSL AERVRREKIG ERMKLLQDLV PGCNKVTGKA LMLDEIINYV  360
QSLQRQVEFL SMKLSSVNDT RLEFNVDALV SKDVMIPSSS NRLHESGLAS ESLSHHNYNN  420
HSQLHTSHVS STNMMLHSPM NSLETSTLAR GFTHLPTLTQ FTDSISQYQM FSEEDLQSIV  480
GMGVAHNPNH ESQNMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886100.0AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029450.0BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056370.0BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593916.10.0PREDICTED: transcription factor bHLH78
RefseqXP_013593917.10.0PREDICTED: transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0D3DBT10.0A0A0D3DBT1_BRAOL; Uncharacterized protein
STRINGBo7g089350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]