PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676782032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25213 Da PI: 9.7175 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.3 | 3.1e-16 | 10 | 49 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ien++ r+ t+ kR+ g+lKKA+EL +LCd+ a+ i s 676782032 10 FIENETTRKSTYKKRKRGLLKKAYELATLCDVPMAIFIES 49 8*******************************99998866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.9E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.839 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-22 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-16 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MTRKKVNLAF IENETTRKST YKKRKRGLLK KAYELATLCD VPMAIFIESQ FDPSPEVYPS 60 REAVDKVLSQ WKALSVMDKT KKMMNQETYL QQRINKATES CRKLGRENRE LAMKEVMFDC 120 LSGKTSPAQV EKSDLRDLGF TIDHYLKDLN HRIEFLMKND GSSSSSVPPP PPPPPPAAAT 180 TSLPMPTVEK GSSSTGFDDM IREQIQINLN KKPTVRDLDL NQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVNLAFIENETTRKSTYKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676782032 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421522.1 | 6e-94 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A078GER9 | 3e-91 | A0A078GER9_BRANA; BnaC02g40080D protein | ||||
TrEMBL | A0A0D3AXE1 | 3e-91 | A0A0D3AXE1_BRAOL; Uncharacterized protein | ||||
STRING | XP_010421522.1 | 2e-93 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 8e-72 | M-type_MADS family protein |