PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781978
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 324aa    MW: 36607.6 Da    PI: 4.8383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781978genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-182875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l++++  +G g+W++ ar+ g++Rt+k+c++rw++yl
        676781978 28 RGPWTVEEDFKLINYISTHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding49.21.2e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        676781978  81 RGNISLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                      78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2092375IPR017930Myb domain
SuperFamilySSF466895.19E-3125122IPR009057Homeodomain-like
SMARTSM007178.1E-162777IPR001005SANT/Myb domain
PfamPF002491.5E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-222982IPR009057Homeodomain-like
CDDcd001671.62E-123075No hitNo description
PROSITE profilePS5129422.47576130IPR017930Myb domain
SMARTSM007175.8E-1480128IPR001005SANT/Myb domain
PfamPF002491.6E-1481124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2283129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDGKGGLEIN KNMGDFENNV DDEMDLRRGP WTVEEDFKLI NYISTHGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNISLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA ASASSSTGSA ATSSCVTTPS  180
DQFVMPASFD DGVNNNNTDI DHLGLTSNPN GYVTPETSSV IVSPASGLSE YHIGNEVGMI  240
ETSYNPDQNL VGPQIMSLSQ NYLDDKGGLL NGDETAMQGQ SYLNWFENVN GTIPSSSDSF  300
WNIGSDEDFW LLQQQQQILN NGSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781978
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756570.0KM975657.1 Brassica napus MYB transcription factor 78-2.1 (MYB78-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151285.10.0PREDICTED: transcription factor MYB108-like
RefseqXP_009151286.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-151MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0N7AGH40.0A0A0N7AGH4_BRANA; MYB transcription factor 78-2.1
STRINGBra010021.1-P0.0(Brassica rapa)
STRINGBra010022.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-141myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]