PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781942
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 348aa    MW: 38415.9 Da    PI: 10.1662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781942genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31281338359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  676781942 281 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 338
                9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.9E-15240277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.1E-33267338IPR003657WRKY domain
PROSITE profilePS5081129.471274340IPR003657WRKY domain
SuperFamilySSF1182901.7E-26277338IPR003657WRKY domain
SMARTSM007745.5E-37279339IPR003657WRKY domain
PfamPF031062.0E-26281337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEIEAANKA AVESCHGVLN LLSQRTNDPT SIMVGTREAV SKFKRVASLL TTRLGGQRKI  60
RKLNSNYYKF RSPLLPQHIF LESPICSNNA ISGCIPVLAP KPLQIIPPAA PSYGDIDPKQ  120
RPGHPPSMMT LNQKMCVDKS FLELKPPSFR AVDQNPYTFI RNHQQGVYPW SNSGLNLKFD  180
GSGGGGGGCY SPSVSNGSRS FVSSLSMDGS VTDYDRNAFH LIGLPQGSDH ISQHSRRTSC  240
SGSLKCASRS KCHCSKKRKL RVKRSIKVPA ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR  300
GYYKCSSVRG CPARKHVERC VDETSMLIVT YEGEHNHSRM LSSQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20267337271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288836.10.0probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A078IHR20.0A0A078IHR2_BRANA; BnaC07g27510D protein
STRINGBra010005.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-179WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]