PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676781674

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

ERF

Protein Properties

Length: 241aa MW: 26632.5 Da PI: 5.0075

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676781674	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	1e-18	58	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g 676781674 58 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 108 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.0E-13	58	108	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.3E-32	59	117	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-21	59	117	IPR016177	DNA-binding domain
SMART	SM00380	3.4E-36	59	122	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.459	59	116	IPR001471	AP2/ERF domain
CDD	cd00018	2.57E-32	60	118	No hit	No description
PRINTS	PR00367	2.5E-10	60	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MVASASEGTS VEEYYSRHSE IVTHLPNSAS DSVIHESKEE QNENAKKTKR VRDSGKHPVY 60 RGVRMRNWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGTS AILNFPELAD 120 SFPRPATLSP RDIQTAALKA AHMEPTTSFT SSSSSSSSST SSLESLVLVM DLSRTESEEL 180 DEIVELPSLG ASYDVDSATV GNEFVFSDSV DYCLYPPPWG QWSEDSYGII PSFNHGLSWN 240 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	57	116	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676781674

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013666100.1	1e-140	dehydration-responsive element-binding protein 3 isoform X1
Refseq	XP_013666101.1	1e-140	dehydration-responsive element-binding protein 3 isoform X2
Swissprot	Q9LYD3	1e-122	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1J3G4S8	1e-140	A0A1J3G4S8_NOCCA; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1J3H0D8	1e-140	A0A1J3H0D8_NOCCA; Dehydration-responsive element-binding protein 3
STRING	Bo9g170060.1	1e-139	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-122	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]