PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676778872
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 496aa    MW: 55347.4 Da    PI: 6.4576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676778872genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12327373455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h e+Er RR+++N++f  Lr ++ +      +K++Ka+ Le Av YI++L+
  676778872 327 NHVEAERMRREKLNQKFYALRAVVANV-----TKMDKASLLEDAVTYINQLK 373
                799*********************997.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5036214IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.783323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-13326377No hitNo description
SuperFamilySSF474592.75E-16326394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-10327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-15327393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MNPLNSDYDL SMIEAFLNSS DLLPLAPANL SLETALQERL HAVLNVTHEA WSYAIFWKPL  60
YNDISGESVL KWSDGVYKGE EGDKTLRRRK TNAEEKKHRN EVFRELSSMI SGISFPVMDD  120
DDDVELTDTE WFYLVSMTCT FRSGFGLAGK AFATYNPVWV TGTDKIHGSG CARANQGGDL  180
GLQTIVCIPS DNGVLELGST EQIRQNSDII QKIRFLINFE GSNDAPSLSS SHHFSSNVTS  240
NSNRDLHSSP VYPQIQNNII FSLATSSTPA TARSLETHSF GEGNISASGV KFEDSGSNID  300
AKATMPENKR HKKRGRKRMH GGEEPLNHVE AERMRREKLN QKFYALRAVV ANVTKMDKAS  360
LLEDAVTYIN QLKSLAEKAE SEKNAIQTQL NELSEEMTGR RNGSSSVCNS QKMASEIEVK  420
MNVKVMGCDA MIRVESSKRN HPGARLMNAF MDLEVEVNHA SISVINDLMI QQATVKMGLR  480
VYKQEQLRDL LFTKMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-47332196194Transcription factor MYC3
4rqw_B2e-47332196194Transcription factor MYC3
4rs9_A2e-47332196194Transcription factor MYC3
4yz6_A2e-47332196194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288DKTLRRR
28389KTLRRRK
3308316KRHKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676778872
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494874.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK70.0BH028_ARATH; Transcription factor bHLH28
TrEMBLA0A3P6E1M80.0A0A3P6E1M8_BRAOL; Uncharacterized protein
STRINGA0A087GNH40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-179NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]