PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776730
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 894aa    MW: 100096 Da    PI: 8.9613
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776730genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.6e-48141341128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeelv +yL +kv+g +l++ +vi+e+di+k++PwdLp      ++e yfFs+r+ ky++g+r+nr+t sgyWkatg dk++ +      
  676776730  14 LPPGFRFHPTDEELVAQYLSRKVTGLPLPA-SVIPEIDICKADPWDLPGD---CDSERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDKQIGK---GIA 106
                79****************************.99***************44...47899**********************************77...789 PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kktLvfykg+ p+g++t+Wv+heyrl
  676776730 107 GMKKTLVFYKGKPPNGTRTNWVLHEYRL 134
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-576156IPR003441NAC domain
PROSITE profilePS5100556.4714156IPR003441NAC domain
PfamPF023651.3E-2515134IPR003441NAC domain
CDDcd073074.62E-25290492No hitNo description
SuperFamilySSF1036573.98E-24296495No hitNo description
Gene3DG3DSA:1.20.1270.602.9E-10333502IPR027267Arfaptin homology (AH) domain/BAR domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MDKRSSIKNR ELRLPPGFRF HPTDEELVAQ YLSRKVTGLP LPASVIPEID ICKADPWDLP  60
GDCDSERYFF STREAKYPNG NRSNRSTGSG YWKATGIDKQ IGKGIAGMKK TLVFYKGKPP  120
NGTRTNWVLH EYRLVDSQQE SYGENTNWVL CRVFLKKRSN SSNSKRKEDE REKKEEREES  180
EDKKSTTCPI IFYDFMRNDV KRRRCCDLNL TPTFCSSSSA SSSVFSCYAL QNVVVGERRR  240
SDHLLGTFVE NLSIFLNSPE KKPFPAMKTS LRRLRGVLHK HESKDRRDLR TLVQKDELAQ  300
ASQDVEDMRD CYDSLLSAAA ATANSAYEFS ESLRELGACL LEKTALNDDE ESGRVLLMLG  360
KLQFELQKLV DKYRSHIFQT ITIPSESLLN ELRIVEEMMR LCDEKRNVYE GMLTRHREKG  420
RSKGGKGETF SAQQLQEAHD EYDNETTLFV FRLKSLKQGQ TRSLLTQAAR HHAAQLCFFK  480
KALNSLEEVE PHVQMVTESQ HIDYHFSGLE DDDGDDEIEN IEDDGSEVHD DGELSFEYRV  540
NDKDQDADTS PVVSSELGQS DITFPLVAGP NTAQQENEEV NYGKSYSFRR DVRIGSQSAP  600
LFVENRTTPP SEKLLRMRSS LTRKFSTYAL PTPVETARSP SSITSLSNSN VASSNPAKAI  660
TKNIWYSSPL EARGPAKVPS RSMAALKEQV LRESNKNISS RLPPPMSDGL LYSRLGTLKR  720
RSFSGPLTSK PMPNKPLSST PRLYSGPIPR NPVSKLPKVS SSSPTASPTF VSTPKISELH  780
ELPRPPPSSS AKSSRAFGYS ALLVSKSQLL SKPLVSSSAS PLPIPPAITR SFSIPTSNLR  840
AAELDMSKTS LGANKLGTAS PPLTPMSLIH PPPSALPERA DHLTMSKQEV NHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481115914168NO APICAL MERISTEM PROTEIN
1ut4_B1e-481115914168NO APICAL MERISTEM PROTEIN
1ut7_A1e-481115914168NO APICAL MERISTEM PROTEIN
1ut7_B1e-481115914168NO APICAL MERISTEM PROTEIN
3swm_A1e-481115917171NAC domain-containing protein 19
3swm_B1e-481115917171NAC domain-containing protein 19
3swm_C1e-481115917171NAC domain-containing protein 19
3swm_D1e-481115917171NAC domain-containing protein 19
3swp_A1e-481115917171NAC domain-containing protein 19
3swp_B1e-481115917171NAC domain-containing protein 19
3swp_C1e-481115917171NAC domain-containing protein 19
3swp_D1e-481115917171NAC domain-containing protein 19
4dul_A1e-481115914168NAC domain-containing protein 19
4dul_B1e-481115914168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892920.0AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
GenBankAC1896510.0AC189651.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS011C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141322.10.0PREDICTED: uncharacterized protein At2g33490-like isoform X1
RefseqXP_013630857.10.0PREDICTED: uncharacterized protein At2g33490-like isoform X1
RefseqXP_013671303.10.0uncharacterized protein At2g33490-like isoform X1
SwissprotO227990.0Y2349_ARATH; Uncharacterized protein At2g33490
TrEMBLA0A0D3C3Y20.0A0A0D3C3Y2_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g182000.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.16e-99NAC domain containing protein 41