PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776376
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 314aa    MW: 36047.8 Da    PI: 7.5752
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776376genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57370.72.9e-221041811797
     DUF573  17 qGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 G++dfka+++k+p +d  ++yef+k+s sf+++ +q+ eKir L+kK+++k++    g++  f ++h++k+fels  iWg
  676776376 104 EGILDFKADKEKNPLEDKRGLYEFIKDSFSFHATLDQVREKIRYLRKKYTRKEES---GEQAYFLNPHQKKCFELSAAIWG 181
                59*************************************************9999...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-18104181IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAKDLKHHPL EVPSLASLSF SEKNMEIISS DGEEEGEGED YHTIFSTEED EPEDPPQRSS  60
TKAVCGSREA HPSAWAVKSG TKRQRDEVTP TNVILKRAKK MSTEGILDFK ADKEKNPLED  120
KRGLYEFIKD SFSFHATLDQ VREKIRYLRK KYTRKEESGE QAYFLNPHQK KCFELSAAIW  180
GAEVIAVESA ISSNGPPKES KRRVTKKPNL VSSRNDKYVE DNSKRGDMEE SALLVKESYW  240
DENSFFVGME YLKVKWTKVR FGTKTKTQEK MKKLQADEFE CKKVEEMLKA MKDQCAHKKV  300
ELLNEVTTLI MASN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202PKESKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633106.19e-95PREDICTED: mediator-associated protein 1-like
TrEMBLA0A397ZSQ52e-86A0A397ZSQ5_BRACM; Uncharacterized protein
STRINGBra028105.1-P2e-82(Brassica rapa)
STRINGBra028106.1-P1e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-35DNA-binding storekeeper protein-related transcriptional regulator