PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676775708
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 1168aa    MW: 129241 Da    PI: 7.2253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676775708genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-199561006155
        AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                 ++y+GVr ++ +gr++AeIrdp +   + r++lg+f++aeeAa+a++aa+++l+g
  676775708  956 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 1006
                 68********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.13702.2E-49227367IPR006130Aspartate/ornithine carbamoyltransferase
SuperFamilySSF536714.19E-82228501IPR006130Aspartate/ornithine carbamoyltransferase
TIGRFAMsTIGR006704.7E-92231503IPR002082Aspartate carbamoyltransferase
PfamPF027294.7E-42232372IPR006132Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding
PRINTSPR001013.7E-28265287IPR002082Aspartate carbamoyltransferase
PRINTSPR001009.3E-16275294IPR006130Aspartate/ornithine carbamoyltransferase
PROSITE patternPS000970275282IPR006130Aspartate/ornithine carbamoyltransferase
PRINTSPR001013.7E-28305314IPR002082Aspartate carbamoyltransferase
PRINTSPR001013.7E-28359376IPR002082Aspartate carbamoyltransferase
PRINTSPR001009.3E-16360371IPR006130Aspartate/ornithine carbamoyltransferase
Gene3DG3DSA:3.40.50.13703.2E-46368501IPR006130Aspartate/ornithine carbamoyltransferase
PfamPF001855.7E-19379501IPR006131Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain
PRINTSPR001013.7E-28451460IPR002082Aspartate carbamoyltransferase
PRINTSPR001009.3E-16487496IPR006130Aspartate/ornithine carbamoyltransferase
PRINTSPR001013.7E-28491496IPR002082Aspartate carbamoyltransferase
PfamPF024707.5E-13644719IPR003399Mce/MlaD
PfamPF008472.3E-139561006IPR001471AP2/ERF domain
CDDcd000188.51E-189561016No hitNo description
PROSITE profilePS5103224.0399571014IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-319571014IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-219571016IPR016177DNA-binding domain
SMARTSM003807.9E-399571020IPR001471AP2/ERF domain
PRINTSPR003671.1E-9958969IPR001471AP2/ERF domain
PRINTSPR003671.1E-9980996IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006207Biological Process'de novo' pyrimidine nucleobase biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006520Biological Processcellular amino acid metabolic process
GO:0032365Biological Processintracellular lipid transport
GO:0009706Cellular Componentchloroplast inner membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004070Molecular Functionaspartate carbamoyltransferase activity
GO:0005319Molecular Functionlipid transporter activity
GO:0005543Molecular Functionphospholipid binding
GO:0016597Molecular Functionamino acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1168 aa     Download sequence    Send to blast
MGNCLRHESE THWAGDDWDD FSTEDEEDHH HHDHSYKTSI KASKTVMVTQ DSKSSDPPHH  60
EIKIRLTKKQ FQDLLSKVNV HDLTGSAEPD ALGRKTEEDN QHRLWRPVLQ SIPEVSLPAF  120
IHRPDYTCLT ALPTLTLLKL PATMSVTSSL TSATLCGASV FPKALACSIE FPSNLSTPFE  180
SSKICLGTYP KKNATWNLAR DIAPMRGTRC HAMQVETMES FTAGKKFQLS DVIEGQQFDR  240
EMLSAIFDVA REMEKIEKSS SQSEILKGYL MATLFYEPST RTRLSFESAM KRLGGEVLTT  300
ENAREFSSAA KGETLEDTIR TVEGYSDIIV MRHFESGAAR KAAATANIPV INAGDGPGEH  360
PTQALLDVYT IQSEIGKLDG ISVALVGDLA NGRTVRSLAY LLAKFKDVKI YFVSPEIVKM  420
KDDIKDYLTS NGVEWEESSD LMEVASKCDV VYQTRIQRER FGERLDLYEA ARGKYIVDKA  480
LLGVMKKNAV IMHPLPRLDE MLTLTQELPT SDKQRTMIGN PVIQVPSSLM PSSSMIVCPR  540
ASPNGLPYLP PKPRSRHLVV RAASNSDAGH TQPSSGEVKN PLTVVLDVPR NIWRQTLKPL  600
SDFGFGKRSV WEGGVGLFIV SGATLLALSW AWLRGFQMRS KFRKYQTVFE LSQASGICTG  660
TPVRIRGVTV GTVIRVNPSL KNIEAIAEIE DDKIIIPKNS LVEVNQSGLL METLIDITPR  720
DPIPEPTVGP LHPECGEEGL IVCDRQKIKG EQGVSLDALV GIFTRIGREV EEIGVANTYS  780
LAERAASVIE EAKPLLKKIQ AMAEDAQPLL SEFRDSGLLK EVECLTRSLT QASDDMRKVH  840
SSIMTPENTE LIQKSIYTLV YTLKNVEAMK PQEKTLNYSS NPSVGYCDPV FKAFTFHTGE  900
TTRTISASRF RVCRVPRKEK TSLNNFEGFI SMRKGRGSSV AGPALPVTAN GSVKEPRYRG  960
VRKRPWGRFA AEIRDPLKKS RVWLGTFDSA EEAARAYDAA ARNLRGPKAK TNFPIDCSPS  1020
SPLQPLNYHQ NQNQNQIDPF MDHRLYGGGN NFQEQQIISR PASSSMSSTV KSCSGPRQTM  1080
IEAAAASSSV AKPLPSTTKR YPRTPPVAPE DCHSDCDSSS SVIDDGDDIA SSSSRRKPPF  1140
QFDLNFPPLD GVDLFNGTDD LHCTDLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2rgw_A8e-752295221291Aspartate carbamoyltransferase
2rgw_B8e-752295221291Aspartate carbamoyltransferase
2rgw_C8e-752295221291Aspartate carbamoyltransferase
2rgw_D8e-752295221291Aspartate carbamoyltransferase
2rgw_E8e-752295221291Aspartate carbamoyltransferase
2rgw_F8e-752295221291Aspartate carbamoyltransferase
3e2p_A8e-752295221291Aspartate carbamoyltransferase
3e2p_B8e-752295221291Aspartate carbamoyltransferase
3e2p_C8e-752295221291Aspartate carbamoyltransferase
3e2p_D8e-752295221291Aspartate carbamoyltransferase
3e2p_E8e-752295221291Aspartate carbamoyltransferase
3e2p_F8e-752295221291Aspartate carbamoyltransferase
3e2p_I8e-752295221291Aspartate carbamoyltransferase
3e2p_J8e-752295221291Aspartate carbamoyltransferase
3e2p_K8e-752295221291Aspartate carbamoyltransferase
3e2p_L8e-752295221291Aspartate carbamoyltransferase
3e2p_M8e-752295221291Aspartate carbamoyltransferase
3e2p_N8e-752295221291Aspartate carbamoyltransferase
4ekn_B8e-752295221291Aspartate carbamoyltransferase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676775708
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0482300.0AY048230.1 Arabidopsis thaliana AT3g20320/MQC12_7 mRNA, complete cds.
GenBankAY0857220.0AY085722.1 Arabidopsis thaliana clone 17362 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P5ZD140.0A0A3P5ZD14_BRACM; Uncharacterized protein
STRINGBra035791.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-90ethylene response factor 7