PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676774830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 22368.4 Da PI: 7.6302 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.8e-09 | 13 | 72 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr++lP ++ +++K ++ + Av++I+++q 676774830 13 KLLHRNIERQRRQEMAVLFASLRSHLPLQYikvcssLSSQGKRAMSDHVNGAVNFINDMQ 72 567999**********************888*****8888899999**********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.74E-12 | 8 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-6 | 9 | 76 | No hit | No description |
PROSITE profile | PS50888 | 11.204 | 11 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-6 | 13 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-8 | 13 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSNERDETKK EKKLLHRNIE RQRRQEMAVL FASLRSHLPL QYIKVCSSLS SQGKRAMSDH 60 VNGAVNFIND MQTRIKDLTA RRDELKRQID PIFPGPSSQT GSGSGAGSSR SDPASVMVQP 120 CVSGIEVVVN SSASGVEAWA LSRVLEVLHE QGLEVISSLT ARVNERLMYT IQAEVNSLVS 180 FDLAWLQQKL IEELEHSTTG Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676774830 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401909.2 | 1e-104 | transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 4e-97 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | V4LLM0 | 1e-103 | V4LLM0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401909.1 | 1e-104 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-93 | bHLH family protein |
Publications ? help Back to Top | |||
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