PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676774678

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 119aa MW: 13703.8 Da PI: 5.9652

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676774678	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.2	3.1e-29	12	109	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+C +++++C+k+C +a yfp+e + +++ + +lFG+ n++k++k ++eee+++++ss++ e+ a+++dP++G +g+++k+ ++++ +k l++lk 676774678 12 PCAVCITKNKRCNKNCEFAAYFPNELEGDYESADQLFGTPNIIKMMKLASEEEKPMLASSILTEGAAWTDDPIRGGFGMLRKIMWEVNLHKIYLEELK 109 7******************************************************************************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.185	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-23	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MEIQRANNKR EPCAVCITKN KRCNKNCEFA AYFPNELEGD YESADQLFGT PNIIKMMKLA 60 SEEEKPMLAS SILTEGAAWT DDPIRGGFGM LRKIMWEVNL HKIYLEELKK IKEENKNSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676774678

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453977.1	3e-50	PREDICTED: LOB domain-containing protein 5-like
Swissprot	O82198	9e-45	LBD9_ARATH; LOB domain-containing protein 9
TrEMBL	A0A078JEG2	9e-47	A0A078JEG2_BRANA; BnaUnng01320D protein
STRING	XP_006299784.1	3e-44	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36000.1	3e-44	LOB domain-containing protein 5