PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G36000.1 | ||||||||
Common Name | ASL33, LBD5, T22A15.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 14258.5 Da PI: 7.288 | ||||||||
Description | LOB domain-containing protein 5 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.1 | 5e-32 | 9 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C++C +++r+C++ C +a+yfp e +++++ +++lFG+ n++ +++++pee+++++++s+++e++a+++dP++G +g+i+kl ++++ +ka l +l+ AT1G36000.1 9 PCSVCITKNRNCPRFCEYAEYFPYELQSQYESANELFGTPNIITMMQHAPEEKKQMLATSIIMEGNAWTEDPISGGFGMIQKLMWKIMLHKAYLRELQ 106 7*********************************************************************************************9999 PP DUF260 99 eel 101 e++ AT1G36000.1 107 EKI 109 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.649 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-25 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEPLGNRRPC SVCITKNRNC PRFCEYAEYF PYELQSQYES ANELFGTPNI ITMMQHAPEE 60 KKQMLATSII MEGNAWTEDP ISGGFGMIQK LMWKIMLHKA YLRELQEKIK EEKEKKPASS 120 LY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240254208 | 0.0 | ||||
Genevisible | 260187_at | 0.0 | ||||
Expression Atlas | AT1G36000 | - | ||||
AtGenExpress | AT1G36000 | - | ||||
ATTED-II | AT1G36000 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G36000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G36000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473866 | 0.0 | AB473866.1 Arabidopsis thaliana ASL33 mRNA for ASYMMETRIC LEAVES2-like 33 protein, complete cds. | |||
GenBank | DQ056480 | 0.0 | DQ056480.1 Arabidopsis thaliana LOB domain family protein (At1g36000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_174832.1 | 1e-87 | LOB domain-containing protein 5 | ||||
Swissprot | Q9C8V8 | 1e-88 | LBD5_ARATH; LOB domain-containing protein 5 | ||||
TrEMBL | A0A178WK74 | 3e-85 | A0A178WK74_ARATH; LBD5 | ||||
STRING | AT1G36000.1 | 6e-87 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12282 | 14 | 32 |
Link Out ? help Back to Top | |
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Phytozome | AT1G36000.1 |
Entrez Gene | 840503 |
iHOP | AT1G36000 |
wikigenes | AT1G36000 |
Publications ? help Back to Top | |||
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