PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771804
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 449aa    MW: 51403.9 Da    PI: 5.3496
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771804genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like46.11e-14197249255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 r  W+ e H +F++a++ L G +   Pk+il++m+ + Ltl +v S LQkY+ 
  676771804 197 RRTLWNYERHMKFLSAISTL-GVNGSRPKSILKIMDDPNLTLRQVSSYLQKYKA 249
                6889****************.9******************************85 PP
2Response_reg29.24.8e-11231301110
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   +l++d + +    l++++e+  y +v+++d+ + a+ ++++++ + l+l  ie+p +d + +  ++++++  +  i++  +++ e    +l   a  
     676771804  23 ILLIDNDLVSVASLTSMFESFSY-KVTTVDTERMAVSMIEKQKdIKLVLANIEIPYIDSHSFQYSLKTKD--ISLILICPKEKTEKSSTYLTKRACY 116
                   899********************.***************77666************************88..9999999999999************ PP

                   EEESS--HHHHHHH CS
  Response_reg  97 flsKpfdpeelvka 110
                   fl Kp+++++++++
     676771804 117 FLKKPISEKDVTNM 130
                   *******9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-1121141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-1421155No hitNo description
PROSITE profilePS5011020.57722135IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-823130IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.43E-11195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-16196253IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-11197248IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVENIDFNLT RNNFYERDGD VSILLIDNDL VSVASLTSMF ESFSYKVTTV DTERMAVSMI  60
EKQKDIKLVL ANIEIPYIDS HSFQYSLKTK DISLILICPK EKTEKSSTYL TKRACYFLKK  120
PISEKDVTNM LMHVLPKQSQ ASFLEKRSFM RSSTASETYQ EKRNIANNDL EINLFCSMEA  180
ENKSNKGKIM GSNVGRRRTL WNYERHMKFL SAISTLGVNG SRPKSILKIM DDPNLTLRQV  240
SSYLQKYKAQ IERMYNTFNE TKVSSKKPIK EKDDSMKLKF YLGGKLDLSN HPYFGNISNN  300
SSNMTSITLP QTNIDHTCNS SFDECYDLPQ EVVPYETNTT HVGIESGGLN YGSYSQTSMT  360
TSGINMKDIS QVQHDEGHNI PIEDMISFDN DVNEMDIESL LGNHGSSEMN MFSNMYLGHE  420
AYNTPIEKGD HFCDRDFMDW IDNVNNEDV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676771804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.15e-76pseudo-response regulator 6