PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771078
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 194aa    MW: 21594.5 Da    PI: 6.7715
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.11.3e-37171171100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++apyf aeq + +fa+vhk+FGasn +k+l +lp ++r da+ +l yeA ar+rdPvyG+vg++++lq+q+ +l+aela++++
  676771078  17 PCGACKFLRRKCVRGCIFAPYFDAEQgTTSFAAVHKVFGASNTSKMLLRLPLNKRLDAVITLSYEALARLRDPVYGSVGHLFSLQHQVTNLQAELAHVQA 116
                7***********************9988********************************************************************9997 PP

     DUF260 100 e 100
                +
  676771078 117 R 117
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.19716118IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-3617115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMTENFNGCG RGGGEGPCGA CKFLRRKCVR GCIFAPYFDA EQGTTSFAAV HKVFGASNTS  60
KMLLRLPLNK RLDAVITLSY EALARLRDPV YGSVGHLFSL QHQVTNLQAE LAHVQARLST  120
FQRFSVQPPQ QMQQPPFDMA HNNEYTMEPT NLDAVWEEEQ LHQAGNEDGE FQEMGIQFVS  180
KYSPAVKLPA CTFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-35131157110LOB family transfactor Ramosa2.1
5ly0_B9e-35131157110LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676771078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.11e-110PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.11e-110PREDICTED: LOB domain-containing protein 19-like
SwissprotO221321e-102LBD19_ARATH; LOB domain-containing protein 19
TrEMBLV4KMP11e-106V4KMP1_EUTSA; Uncharacterized protein
STRINGXP_006397722.11e-107(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.14e-98LOB domain-containing protein 19