PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676767880
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 270aa    MW: 29130.2 Da    PI: 4.7575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676767880genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12204249655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  676767880 204 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKVLQ 249
                689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16201261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-12202253No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15203261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQSTSVGSSG SGSSGGGGGG SGGGGGGGGQ VSRSGLSRIR SAPATWLEAL LEEDEEESLK  60
PTNNLGLTEL LTGNSADLPT SRGSFEFPVE QGLYQQQTGF HRQNSTPADF LSGSDGFIPS  120
FGIPASYEYL PPSIDASPGS KRSREMESLF SSPEFTSQMK GDQSSSEVPA GVSGMTDMNM  180
DNLMEDSVAF RVRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK QTNTADMLEE  240
AVEYVKVLQR QIQELTEEQK RCTCTRKEEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap676767880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288460.11e-137transcription factor bHLH81
SwissprotQ9M0R01e-136BH081_ARATH; Transcription factor bHLH81
TrEMBLA0A1J3GEI91e-144A0A1J3GEI9_NOCCA; Transcription factor bHLH81
STRINGXP_006288460.11e-137(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-118bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]