PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766782
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 513aa    MW: 56330.7 Da    PI: 5.8977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766782genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.47.9e-1361525081374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++Ll+cAeav++++l+la+al++++  las+++ +m+++a+yf+e+La+r++r    +y    p+++    s  + + ++ f+e +P+lkf+h+taNq
  676766782 152 LVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR----IY----PRDDV-GLSLFSDTLQSHFYESCPYLKFAHFTANQ 242
                689****************************************************....44....44443.223333334445***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.g 199
                aIlea++++e+vH+iD++++qGlQWpaL+qaLa Rp+gpp +R+Tg+g   s   e+++e+g++L ++A+++gv+fef+ +v ++l+dl++e+L++kp  
  676766782 243 AILEAFATAEKVHVIDLGLNQGLQWPALIQALALRPNGPPDFRLTGIGT--SLTGESIQEVGWKLGQLASTIGVNFEFKSIVLNNLSDLKPEMLDIKPgS 340
                *************************************************..5699*******************************************99 PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E++aVn+vl+lhrll++++s+++    +L+++ks++P++++vveqea+hn+  Fl+rf+e+l+yys+lfdsle       ++++++++ +lgr+i n+va
  676766782 341 ESIAVNSVLELHRLLAHPGSMDK----FLSTIKSVKPHIMTVVEQEANHNGVGFLDRFTESLHYYSSLFDSLEGP----PSQDRVMSELYLGRQILNIVA 432
                *******************9999....*********************************************999....46677788888********** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ceg++r+erhetl +Wr+r+++ GFkpv+++++a+kqa++ll+ ++  dgy+vee++g+l+lgW++rpL+++SaWr
  676766782 433 CEGEDRVERHETLVQWRKRFGSGGFKPVNIGSNAYKQASMLLALYAgADGYQVEENEGCLLLGWQTRPLIATSAWR 508
                ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120416.9E-323194IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011297.9E-3731100No hitNo description
PROSITE profilePS5098565.501126487IPR005202Transcription factor GRAS
PfamPF035142.8E-133152508IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MKRELNHRET STGKAGSSSM TVSKEEAGGF DELLVVLGYK VRSSDMADVA HKLEQLEMVL  60
GDGISNLSDD TVHYNPSDLS GWVDSLLSDL NSTKNQVKPE PESEYDLSAI PGSAAYPRGK  120
RTRNGSDSST TTTTTTTRSM VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL  180
LASSQAGAMR KVATYFAEGL ARRIYRIYPR DDVGLSLFSD TLQSHFYESC PYLKFAHFTA  240
NQAILEAFAT AEKVHVIDLG LNQGLQWPAL IQALALRPNG PPDFRLTGIG TSLTGESIQE  300
VGWKLGQLAS TIGVNFEFKS IVLNNLSDLK PEMLDIKPGS ESIAVNSVLE LHRLLAHPGS  360
MDKFLSTIKS VKPHIMTVVE QEANHNGVGF LDRFTESLHY YSSLFDSLEG PPSQDRVMSE  420
LYLGRQILNI VACEGEDRVE RHETLVQWRK RFGSGGFKPV NIGSNAYKQA SMLLALYAGA  480
DGYQVEENEG CLLLGWQTRP LIATSAWRFS RVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6514750714378Protein SCARECROW
5b3h_A4e-6514750713377Protein SCARECROW
5b3h_D4e-6514750713377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766782
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391387.10.0DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLV4KMZ40.0V4KMZ4_EUTSA; Uncharacterized protein
STRINGXP_006391387.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]