PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765056
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 499aa    MW: 55944.3 Da    PI: 8.362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765056genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-1665111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
        676765056  65 KGGWTPEEDETLRQAVGTFNGKSWKKIAEFFP-DRTEVQCLHRWQKVL 111
                      688*****************************.************986 PP
2Myb_DNA-binding591.1e-18117163148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ede++v++v+++G+  W+ I++ ++ gR +kqc++rw+++l
        676765056 117 KGPWTQQEDEKIVELVERYGPQKWSIISKSLP-GRIGKQCRERWHNHL 163
                      79******************************.*************97 PP
3Myb_DNA-binding57.43.4e-18169212146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT+eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
        676765056 169 KEAWTPEEELALMNAHRVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 212
                      579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.03460111IPR017930Myb domain
SMARTSM007171.5E-1464113IPR001005SANT/Myb domain
PfamPF002492.5E-1565111IPR001005SANT/Myb domain
SuperFamilySSF466896.75E-1666121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1967120IPR009057Homeodomain-like
CDDcd001671.58E-1268111No hitNo description
PROSITE profilePS5129431.933112167IPR017930Myb domain
SuperFamilySSF466895.62E-32114210IPR009057Homeodomain-like
SMARTSM007174.0E-17116165IPR001005SANT/Myb domain
PfamPF002491.9E-17117163IPR001005SANT/Myb domain
CDDcd001673.43E-14119163No hitNo description
Gene3DG3DSA:1.10.10.606.4E-26121169IPR009057Homeodomain-like
PROSITE profilePS5129423.02168218IPR017930Myb domain
SMARTSM007177.1E-17168216IPR001005SANT/Myb domain
PfamPF002491.2E-16169212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23170217IPR009057Homeodomain-like
CDDcd001671.01E-12171214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDLQGEKGEV KMEDECIENK QSTAASCSSM SDGSGSSFLK SPAAASPATV SPTHRRTSGP  60
IRRAKGGWTP EEDETLRQAV GTFNGKSWKK IAEFFPDRTE VQCLHRWQKV LNPDLIKGPW  120
TQQEDEKIVE LVERYGPQKW SIISKSLPGR IGKQCRERWH NHLNPGINKE AWTPEEELAL  180
MNAHRVHGNK WAEIAKVLPG RTDNSIKNHW NSSLKKKSEF YLANGALPPS AAKNGVHESA  240
TKRPLYFQRR DSVTVAQSPS VTRQINKPDE VGKDQLNSSV LLEEASPMTG FSEYARTRQL  300
PNPEPSPENG GVAKNGYHLY YNKQPHTEYY MASEADKQRM YGYECGCSPS ASPVIFFTPP  360
PPCRKEYSNG TAPTSPESFL REAARTFPNT PSIFRKRRRK SVVAPDNNNA AKTDEEAKEV  420
VDQKVNDNIS ESPDCEEKQN NGSNAYNLSP PYRIRSKRTA VFKSRQLDFI SPEEEKADDE  480
TKSSEKDKLL DGGDSQLPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68642175158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68642175158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394398RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765056
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407683.10.0transcription factor MYB3R-3
RefseqXP_020887312.10.0transcription factor MYB3R-3
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A1J3DJP90.0A0A1J3DJP9_NOCCA; Myb-related protein 3R-1
STRINGXP_006407683.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]