PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764944
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 386aa    MW: 41993.4 Da    PI: 8.1849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764944genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046184206123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++F++   L  H  +H
  676764944 184 YQCKTCDRTFPSFQALGGHRASH 206
                9***********99999998887 PP
2zf-C2H2130.00031263285123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  676764944 263 HECGICGAEFTSGQALGGHMRRH 285
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-9183206No hitNo description
PfamPF139122.3E-12183208IPR007087Zinc finger, C2H2
SMARTSM003550.028184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471184211IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-9258285No hitNo description
Gene3DG3DSA:3.30.160.607.9E-4261287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11262287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93263287IPR007087Zinc finger, C2H2
SMARTSM003550.047263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
METAEEAISA AKEQSLILKG KRTKRLRPQS PIPFSIVPPM SSQEPNVEEK STSLVSKEKS  60
LNDEINNKKN ENNILINGVT SSSSASSSSN NNATLKAAAD EEDQDMANCL ILLAQGHSIP  120
HHNRNNQLPQ PHPQQQTRQL MISYQESGNN NNGYRSSSRR FLETSSPNGT TTNGSGGRAG  180
YYVYQCKTCD RTFPSFQALG GHRASHKKPK AAAGLHSDHD LKKSIYDDAV SLHLNNVLTV  240
TPNNNSSHRS LVVYGKASNN KVHECGICGA EFTSGQALGG HMRRHRGAVV AAAAASTATV  300
AMSDGPVHPV QAPVKRARSA VVSLDLDLNL PAPEDENRAN GLSFASKQEH EQEHEHEHEQ  360
TQQKKPREEQ KSFVLSSAPT LVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640212.10.0zinc finger protein ZAT5-like
RefseqXP_018514567.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A397ZEM10.0A0A397ZEM1_BRACM; Uncharacterized protein
STRINGXP_010484714.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-140C2H2 family protein