PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676763026

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C2H2

Protein Properties

Length: 286aa MW: 31924.8 Da PI: 7.6084

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676763026	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksF + L H+r+H 676763026 5 HKCKLCWKSFVNGRALGGHMRSH 27 79********************9 PP
2	zf-C2H2	12.1	0.00059	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H +H 676763026 169 FECETCEKVFKSYQALGGHRASH 191 89***********9999998887 PP
3	zf-C2H2	13.4	0.00023	224	246	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+Fs+ L H r+H 676763026 224 HECPICLKVFSSGQALGGHKRSH 246 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.09E-9	4	27	No hit	No description
Pfam	PF13912	1.4E-6	5	28	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.783	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.03	5	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.09E-9	164	191	No hit	No description
Pfam	PF13912	5.5E-11	169	193	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.824	169	196	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.087	169	191	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-12	224	246	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.432	224	247	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.084	224	246	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	226	246	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEEKHKCKLC WKSFVNGRAL GGHMRSHMLH HPLPVQVEPA SSSKADPGSA LQDRESETES 60 SKNPTRKRSR LHRRSISVSL RHQKTSEEEE EDVEEESEAA AVKIVRDKTS HFLSELCTEQ 120 EPMSSVSDAE TAEEDVAFSL MMLSRDKWEK EGSHGEIRWD KKKEKKKWFE CETCEKVFKS 180 YQALGGHRAS HKKKRALEGS SSSSSSSCVI LESDEMTKKK GSSHECPICL KVFSSGQALG 240 GHKRSHATVT GLLGNSPAKR GNISFIDLNL PAPSEDEDLV SSIFAR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676763026

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418480.1	1e-112	zinc finger protein ZAT1
Swissprot	Q39092	1e-106	ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBL	A0A087HKC1	1e-119	A0A087HKC1_ARAAL; Uncharacterized protein
STRING	A0A087HKC1	1e-120	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	1e-89	C2H2-like zinc finger protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003]