PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676762152
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 349aa    MW: 39912.3 Da    PI: 4.9308
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676762152genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573133.48.3e-42129226297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97 
                +fqrlwseeDei+lLqG+id++ +tg+sp+dd + fye vkk isf+vsk+q++eKir+LKkKf+++  k  +k+g++p+f+k+hd+k+f+lsk iWg
  676762152 129 YFQRLWSEEDEIALLQGIIDYNRETGASPYDDKHVFYERVKKDISFDVSKTQFMEKIRSLKKKFENNLGKgkKKNGEDPAFAKPHDRKAFDLSKLIWG 226
                8******************************************************************99877899**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.2E-35130226IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSGKLFNPLQ DPPNASSSDE EDEEVEETVG NSSEEEEEEE EEEDVSSKNQ TVKTPQPEKK  60
QVSESEPDSG SDEETDSEPE TERKEPVKKN QDSKKVEPLV TKKRSSETDA SKDAKRVKTV  120
SGEETRKNYF QRLWSEEDEI ALLQGIIDYN RETGASPYDD KHVFYERVKK DISFDVSKTQ  180
FMEKIRSLKK KFENNLGKGK KKNGEDPAFA KPHDRKAFDL SKLIWGDNGI LAVESSSAVK  240
SNGKSKKKRK DVECKEEEEE LVYSKAKAKV ESVVVKKQEF VSIVESVARF GVDELAAKQG  300
WAKLSEEDKK RFEEQWKVLQ IKEFKFYSQK SGFIHEVVTK MAEAFRPKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202GKGKKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676762152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631648.11e-111PREDICTED: mediator-associated protein 1-like
TrEMBLA0A3P6CXR11e-110A0A3P6CXR1_BRAOL; Uncharacterized protein
STRINGBo4g143830.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-51DNA-binding storekeeper protein-related transcriptional regulator