PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676761474
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 495aa    MW: 56147.7 Da    PI: 7.1807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676761474genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-53111372127
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                ppGfrFhPtdeelv +yLkkkv++++++l +vi+e+d+yk+ePwdL++     ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+  +++
  676761474  11 PPGFRFHPTDEELVGYYLKKKVASQRIDL-DVIREIDLYKIEPWDLQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVYL-NSK 108
                9****************************.9***************953432234677**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                l+g++ktLvfy+grap+g+k+dW++hey 
  676761474 109 LIGMRKTLVFYRGRAPNGQKSDWIIHEYY 137
                ***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-586160IPR003441NAC domain
PROSITE profilePS5100557.3710160IPR003441NAC domain
PfamPF023654.0E-2611136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MGVDQESSSI PPGFRFHPTD EELVGYYLKK KVASQRIDLD VIREIDLYKI EPWDLQERCR  60
IGYEEQKEWY FFSHKDKKYP TGTRTNRATV AGFWKATGRD KAVYLNSKLI GMRKTLVFYR  120
GRAPNGQKSD WIIHEYYSLE SHQNAPPQEE GWVVCRAFKK RTTVPTKRRQ PWDQNCFLYD  180
ATFLEPLDKN VLIKRAKYNT DDLAVAPFKQ ELLSEANHIV DDGDLASMYL LKSIDDDQFS  240
QLPQLESPSL PSAKSTISEN SRAGKDDMSA ERRMMDWRAL DKVESEFENG MLLACKCLKR  300
HRDILIALRK KVEETVVLSL VHFRFKNSDS VMGASDSTLL GGGQENRGGD VITTISHRSE  360
IVDPVLENLK SLTVSRPILK SPPTESSLTD ILVRKALSTS SSNTVDPQIL LELFSIYREC  420
QDSKAQDITK RQVELGELKG RLTEVINNCD TLCKRINSEG PESLRSTVTP FVLAPPDSVS  480
VSSTTTTTLS SKQDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48916416169NO APICAL MERISTEM PROTEIN
1ut4_B2e-48916416169NO APICAL MERISTEM PROTEIN
1ut7_A2e-48916416169NO APICAL MERISTEM PROTEIN
1ut7_B2e-48916416169NO APICAL MERISTEM PROTEIN
3swm_A2e-48916419172NAC domain-containing protein 19
3swm_B2e-48916419172NAC domain-containing protein 19
3swm_C2e-48916419172NAC domain-containing protein 19
3swm_D2e-48916419172NAC domain-containing protein 19
3swp_A2e-48916419172NAC domain-containing protein 19
3swp_B2e-48916419172NAC domain-containing protein 19
3swp_C2e-48916419172NAC domain-containing protein 19
3swp_D2e-48916419172NAC domain-containing protein 19
4dul_A2e-48916416169NAC domain-containing protein 19
4dul_B2e-48916416169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00590DAPTransfer from AT5G66300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676761474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382780.0KF738278.1 Brassica napus NAC transcription factor 105 (NAC105.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302610.11e-177NAC domain-containing protein 105-like
SwissprotQ9FH591e-166NC105_ARATH; NAC domain-containing protein 105
TrEMBLE5F7231e-180E5F723_9BRAS; NAC105
STRINGBo7g065010.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151341619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.11e-168NAC domain containing protein 105
Publications ? help Back to Top
  1. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]