PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676758944

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 212aa MW: 23966.6 Da PI: 9.9472

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676758944	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68	8.8e-22	19	61	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ ++ rqvtfskRr+g++KKA+EL++LC+ae+ +i++s+ k 676758944 19 IKKETHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVYSPAKK 61 8999***********************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.36E-28	9	86	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.591	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.8E-31	9	68	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.34E-34	10	85	No hit	No description
PRINTS	PR00404	1.2E-16	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-24	18	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-16	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-16	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTSTKKESMG RQRIPMVKIK KETHRQVTFS KRRAGLFKKA SELCTLCGAE IGIIVYSPAK 60 KPFSFGHPSV ESVLDRYLSR NNLSLAQTQK PQGENAASSD LSMRWTQILS EVEEEKNKGQ 120 AMAEMKKARQ SMTKWWEGPV EEMNMVQLRE MKSALEELRR IVVSETSTVP FKEVKEDVFG 180 FLDKNNVTAP SYMNMSTGLS NVHNVGYGNG CF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
1tqe_R	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
1tqe_S	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
6c9l_A	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
6c9l_B	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
6c9l_C	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
6c9l_D	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
6c9l_E	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
6c9l_F	3e-15	9	93	1	92	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676758944

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022547572.1	1e-127	agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	1e-109	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A397Y7Y5	1e-126	A0A397Y7Y5_BRACM; Uncharacterized protein
STRING	Bo8g099550.1	1e-125	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-111	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]