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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676758158 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
GRAS |
| Protein Properties |
Length: 539aa MW: 58066.3 Da PI: 5.1081 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676758158 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 338 | 1.6e-103 | 252 | 538 | 1 | 301 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99
lv++L++cAea+++++l+la+al++++ la +++ +m+++a+yf+eALa+r++r l pp+++ +++ s++l++ f+e++P+lkf+h+taN
676758158 252 LVHALMACAEAIQNNNLTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LsPPQNQIDHSLSDTLQM--HFYETCPYLKFAHFTAN 341
689****************************************************........414444444445555444..4**************** PP
GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198
qaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa R++gpp +R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ +va++l+dl+ ++L+++p
676758158 342 QAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPs 441
**************************************************************************************************99 PP
GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
Ea+a+n+v++lh+ll +++ +e+ vL +vk+++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle s++++++++++lg++i+n+
676758158 442 eTEAVAINSVFELHKLLGRPGGIEK----VLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGA---PSSQDKVMSEVYLGKQICNL 534
999******************9999....*********************************************999...79999*************** PP
GRAS 298 vace 301
vace
676758158 535 VACE 538
***9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0010218 | Biological Process | response to far red light |
| GO:0042176 | Biological Process | regulation of protein catabolic process |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:2000033 | Biological Process | regulation of seed dormancy process |
| GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MKRDLHQFQG PNSRLSSNHG TAIPGSSSSS NSSPAVCPKD KMMMVKEEED GGNMDELLAV 60
LGYKVRSSEM AEVALKLEQL ETMMGNAQED GLSHLATDTV HYNPAELYSW LDNMLSELNP 120
SGSNTTVLPS PEMNTSFLTG AGGDSSTITT SIGGGGGGFA ASDYDLKAIP GNAVYRRPNQ 180
LAIDASSSSS NQAVNNTQNN KRLKSCPSPD SMVTSPAAQI GGVMGTTVTA TTAGESTRSV 240
ILVDSQENGV RLVHALMACA EAIQNNNLTL AEALVKQIGF LAVSQAGAMR KVATYFAEAL 300
ARRIYRLSPP QNQIDHSLSD TLQMHFYETC PYLKFAHFTA NQAILEAFEG KKRVHVIDFS 360
MNQGLQWPAL MQALALREGG PPVFRLTGIG PPAADNSDHL HEVGCKLAQL AEAIHVEFEY 420
RGFVANSLAD LDASMLELRP SETEAVAINS VFELHKLLGR PGGIEKVLGV VKQIKPVIFT 480
VVEQESNHNG PVFLDRFTES LHYYSTLFDS LEGAPSSQDK VMSEVYLGKQ ICNLVACEX
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352564 | 0.0 | AK352564.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-P11. |
