PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676757746
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family RAV
Protein Properties Length: 349aa    MW: 39333.1 Da    PI: 9.7399
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676757746genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.57e-1364112155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  676757746  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAHRFRG 112
                689***9788.8*********3.....5**********99************998 PP
2B3101.64.4e-32194298199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ tpsdv+k++rlv+pk+ ae+h      g ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD++ Fk+++ ++++l++
  676757746 194 FEKAVTPSDVGKLNRLVIPKHQAEKHfplpltGDVSVRGTLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDSISFKRSNGQDQQLYI 293
                89******************************99999****************************************************98779999999 PP

                EEE-S CS
         B3  95 kvfrk 99 
                ++ +k
  676757746 294 GWKSK 298
                99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-2564122No hitNo description
PfamPF008473.1E-864112IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1764121IPR016177DNA-binding domain
PROSITE profilePS5103220.08665120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2065120IPR001471AP2/ERF domain
SMARTSM003804.8E-2865126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-38187300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-30191299IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-27193286No hitNo description
SMARTSM010193.1E-26194299IPR003340B3 DNA binding domain
PROSITE profilePS5086313.719194299IPR003340B3 DNA binding domain
PfamPF023623.4E-28194298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDAVSSVDES STSTDSIHTP AKLMPPTARK SSSPASLYRM GSGSSVVLDS ENGVEAESRK  60
LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAHRF RGRDAVTNFK  120
VDTTLGHEDE DEDESDFLNA HSKSEIVDML RKHTYKEELE QRKRKRHGKG NKKETAFVDV  180
TVVATGFKSA ESLFEKAVTP SDVGKLNRLV IPKHQAEKHF PLPLTGDVSV RGTLLNFEDV  240
NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDSIS FKRSNGQDQQ LYIGWKSKSG  300
SDQNTGRIAV RLFGVDIYSV KSPNDVVMKE ETEMLSLRCN KKQRLVTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-6619030210121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676757746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644813.10.0AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS060.0RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A397ZAC80.0A0A397ZAC8_BRACM; Uncharacterized protein
STRINGBo2g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-169ethylene response DNA binding factor 3