PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676757094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | AP2 | ||||||||
Protein Properties | Length: 555aa MW: 59962.5 Da PI: 7.6428 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 202 | 258 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g 676757094 202 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 258 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 303 | 352 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g 676757094 303 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 352 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.71E-19 | 202 | 268 | No hit | No description |
SuperFamily | SSF54171 | 4.32E-15 | 202 | 268 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-9 | 202 | 258 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-12 | 203 | 267 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-22 | 203 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 203 | 266 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 204 | 215 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-24 | 301 | 362 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 301 | 362 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 302 | 360 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 302 | 366 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 302 | 360 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 303 | 352 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 342 | 362 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MKNNNNKSSS SSSYDSSLSP SSSSSSQQNW LSFSLSNNNN FNSSSSPNLT SSTSDHHHPH 60 PSHLSLFQAF STTPAQRQDE SPGVSNGDAT AVLSIYPGGP KLENFLGGGA TATTTTRPMQ 120 QVQSLGGVVF SSDVQQPHHP PSAAEIYDSE LKSIAASFLG NYSGGHSSEV SSGQKQQHNP 180 LAVAEASPNP KKNVESFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD 240 KEEKAARAYD LAALKYWGPT TTTNFPISNY EPELEEMKHM TRQEFVASLR RKSSGFSRGA 300 SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD 360 ISRYDVKSIA SCNLPVGGLT PKTSPATAAT DKQVDLSPSD TPALTSSSLT FNVATPVHDH 420 EGTFFHTGIP IKQDPAAQYW SNVFGFQPNP KTEIRPVSTF GSDLHNPSPG FAMMPGMHDG 480 GNNFGGGFVE SEGYNNHSAA SSPVSAIPLS STTTIGNGDE GYSGNINWIN NNISNSYQTA 540 KSNLSVLQTP VFGLE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676757094 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483252.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 0.0 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A078HZQ8 | 0.0 | A0A078HZQ8_BRANA; BnaC02g11520D protein | ||||
STRING | XP_010483252.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 0.0 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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