PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676755938

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 316aa MW: 36144 Da PI: 4.6812

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676755938	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.7	1e-40	4	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 p+Gf+F+Ptdee+v++yL+ k + +++l ++v+++v+i++++Pw+Lp + +++ ++ wyfF ++++ky+ g+r++r+tk+g+Wk+tg + ++++k 676755938 4 PVGFEFRPTDEEIVDYYLRVKNLDANTSLvDQVMNTVNICSFDPWELPsQsrIIRSIDQVWYFFGRKENKYNIGDRQSRQTKTGFWKKTGVTLDITQKrg 103 89***************99888886661556**********953555566788**********************************987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g kk+Lvf+ + p+g++++Wvmhey++ 676755938 104 NREKIGQKKVLVFHLSKIPNGSRSSWVMHEYHA 136 7888*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-40	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	43.615	3	155	IPR003441	NAC domain
Pfam	PF02365	9.7E-23	4	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVNPVGFEFR PTDEEIVDYY LRVKNLDANT SLVDQVMNTV NICSFDPWEL PSQSRIIRSI 60 DQVWYFFGRK ENKYNIGDRQ SRQTKTGFWK KTGVTLDITQ KRGNREKIGQ KKVLVFHLSK 120 IPNGSRSSWV MHEYHATFLP PNQMITYTVC KVEFKGEEGN TSFSSGSEIG ISHSSIPPMN 180 NSGGSGRSSF EWITCQELQD SRQFTGSFDM DAMDMTFDNL LSDDWKIFCD DEDDDNDDEQ 240 RKIVSMQEDR NDYRPKKSQT FVFIGHTDYD SDSDSVSATT SSIQTSSTCD SFGTSNPRID 300 KIKELQESPN STINLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-25	4	135	18	141	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-25	4	135	18	141	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-25	4	135	18	141	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-25	4	135	18	141	NO APICAL MERISTEM PROTEIN
3swm_A	1e-24	4	135	21	144	NAC domain-containing protein 19
3swm_B	1e-24	4	135	21	144	NAC domain-containing protein 19
3swm_C	1e-24	4	135	21	144	NAC domain-containing protein 19
3swm_D	1e-24	4	135	21	144	NAC domain-containing protein 19
3swp_A	1e-24	4	135	21	144	NAC domain-containing protein 19
3swp_B	1e-24	4	135	21	144	NAC domain-containing protein 19
3swp_C	1e-24	4	135	21	144	NAC domain-containing protein 19
3swp_D	1e-24	4	135	21	144	NAC domain-containing protein 19
4dul_A	9e-25	4	135	18	141	NAC domain-containing protein 19
4dul_B	9e-25	4	135	18	141	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00123	DAP	Transfer from AT1G02250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676755938

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171727.2	1e-124	NAC domain containing protein 5
Swissprot	O81914	1e-125	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A178W508	1e-123	A0A178W508_ARATH; NAC005
STRING	AT1G02250.1	1e-123	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-104	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]