PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755262
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 209aa    MW: 23729.6 Da    PI: 8.2156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755262genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-1474126155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +r++h e+Er+RR+++ s f  Lr +lP+      ++K s ++ + +Av+YIk+L+
  676755262  74 KRAKHREIERQRRQEVTSLFKHLRYILPSqY---IKGKRSSSDHVHEAVNYIKDLE 126
                79***************************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-1571147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-1071130No hitNo description
PROSITE profilePS5088813.64373125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-1274126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1274144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDYASSSMFT VDFTYENELD FSSLITPSTF ISFQEPNPSN PIIHCADTGN IGRQRICETA  60
MTENTKEDVE PKNKRAKHRE IERQRRQEVT SLFKHLRYIL PSQYIKGKRS SSDHVHEAVN  120
YIKDLEKKIK EASEKRDRIK RSTTHPSSTG ECSTRSLASS WPSPPSLSSS CSCVGDAHID  180
VKVEKGRYIN FSVLEEKIIN MGTSYLNGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17385KRAKHREIERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755262
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417224.19e-96transcription factor bHLH55
SwissprotQ9LN952e-81BH055_ARATH; Transcription factor bHLH55
TrEMBLV4KZW82e-94V4KZW8_EUTSA; Uncharacterized protein
STRINGXP_006417224.13e-95(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.13e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]