PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676754744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20865.5 Da PI: 7.5963 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.3 | 2.2e-37 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+ dCv+apyf +e+ p+kfa++hk+FGasnv+k+l ++p +er +++ +++yeAear++dPvyG+v+++++lqqq++ l+a+l +lk+ 676754744 11 PCGACKFLRRKCVLDCVFAPYFFSEEsPAKFAAMHKVFGASNVSKILLHVPVQERYEVVVTMAYEAEARLHDPVYGCVSHVFALQQQVAFLQAQLMQLKA 110 7*********************776559******************************************************************999886 PP DUF260 100 e 100 + 676754744 111 S 111 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.413 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-36 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MASSSTGTGS PCGACKFLRR KCVLDCVFAP YFFSEESPAK FAAMHKVFGA SNVSKILLHV 60 PVQERYEVVV TMAYEAEARL HDPVYGCVSH VFALQQQVAF LQAQLMQLKA SLSHQTITTI 120 AGDLRNRSDM TWQQTSGYTT TYKPYSHENP NTPVSPQRSI GSLEHSNTSS EVTTNVQGIH 180 TGWSGFHQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-38 | 2 | 105 | 2 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-38 | 2 | 105 | 2 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676754744 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504777.1 | 1e-115 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 5e-77 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | R0HJB8 | 1e-110 | R0HJB8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010504777.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-64 | lateral organ boundaries-domain 16 |