PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753784
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 302aa    MW: 34857.3 Da    PI: 5.4569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753784genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15113164155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  676753784 113 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 164
                79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-14111167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-13111168No hitNo description
SuperFamilySSF474592.22E-17112176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPLETVVYPQ DPFGYLSNCK DFMFQDLYYQ EEVVPQDTKN NIDMLGKEER FLENDTEEER  60
QWRDYHHKYP LIPTLDEELD LPAIDMENHP PMQQRRKRRR TRSNKNKEEI ESQRMTHIAV  120
ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHLLQSM EPRRTTTTTH  180
EADTSTSSLV GPFSDFFTYP QFSTNPSLAM ESSSSSAEIE VTVAEGHANI KIMAKKKPKQ  240
LLKLVASIQS LRLTLLHLNV TTLDNSILYS ISVKVEEGSQ LTTVDDIATA LNQIIRRIQE  300
ES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399QRRKRRR
29599RKRRR
395100RKRRRT
4113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753784
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663812.10.0transcription factor bHLH94-like isoform X1
SwissprotQ9SK911e-162BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0D3D7C21e-178A0A0D3D7C2_BRAOL; Uncharacterized protein
STRINGBo7g057920.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-157bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]