PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753470
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 180aa    MW: 20840 Da    PI: 4.4474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753470genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-115799754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 Er+RR+++N++++ Lr+++P+ +      Kl+Ka++ +  ++Y+++L
  676753470 57 VSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99
               57*********************66......***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0255099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-105399No hitNo description
SuperFamilySSF474593.27E-1654120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1556116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEDLDDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGES SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKRLEVEI RELESRSILL  120
ENPTRDFDCI NNFPDNQQQD LSGVNVMRSK KSKQMDYNDF GSSITRVHNH SFIEVLEVSK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128266.11e-116PREDICTED: transcription factor bHLH27-like isoform X2
RefseqXP_013667795.11e-116transcription factor bHLH27 isoform X2
SwissprotQ700E35e-97BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A078I0D41e-115A0A078I0D4_BRANA; BnaA01g07020D protein
TrEMBLA0A398AQH21e-115A0A398AQH2_BRACM; Uncharacterized protein
STRINGBra011152.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.46e-84bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]