PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G29930.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 21607 Da PI: 4.6757 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 57 | 99 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr+++P+ + Kl+Ka++ + ++Y+++L AT4G29930.4 57 VSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99 57*********************66......***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.64E-11 | 53 | 99 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 54 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 56 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-13 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-9 | 57 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER 60 NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKTLEAEI RELESRSTLL 120 ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEVR TMHYLAVHSK 180 LPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
5gnj_B | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
5gnj_E | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
5gnj_F | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
5gnj_G | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
5gnj_I | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
5gnj_M | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
5gnj_N | 4e-13 | 56 | 119 | 10 | 71 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.44068 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G29930 | |||||
AtGenExpress | AT4G29930 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G29930.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G37850, AT5G13080, AT5G46690, AT1G79430 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G29930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630482 | 0.0 | AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930. | |||
GenBank | AK117730 | 0.0 | AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21. | |||
GenBank | AK176201 | 0.0 | AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06. | |||
GenBank | AK176276 | 0.0 | AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11. | |||
GenBank | AK228201 | 0.0 | AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05. | |||
GenBank | BT005869 | 0.0 | BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001119080.1 | 1e-136 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q700E3 | 1e-125 | BH027_ARATH; Transcription factor bHLH27 | ||||
TrEMBL | Q9SZR4 | 1e-122 | Q9SZR4_ARATH; Uncharacterized protein AT4g29930 | ||||
STRING | AT4G29930.3 | 1e-123 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G29930.4 |
Entrez Gene | 829116 |
iHOP | AT4G29930 |
wikigenes | AT4G29930 |