PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676753266

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 482aa MW: 52832.6 Da PI: 6.9651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676753266	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	272	311	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRR++iN+++ L+el+P + K +Ka++Le A+eY+ksLq 676753266 272 RRREKINEKMKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 311 8****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.63E-14	260	315	No hit	No description
PROSITE profile	PS50888	15.256	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-12	268	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-10	272	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-15	272	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-17	272	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
METRGEDDLV ELLWKSGQVV RSSQTQRPSV PPPILRGSGS GSGSGGGEEP NAPLPQPPPR 60 LHSHHHQPYD QNLFIREDEM ASWLHHHPLP EDESGSSHLF YSNVVSIPFT QPQGSVSLTP 120 PSLPPPTPAA ASGMYTQTAA VRSMGQTIAG TRAENFFNFS RLRGRVETAP PWVQVVGDST 180 QVGSNATPTS SATESCLTPA TVTGGVSQTF AVPPSLSRKA IETVCEIAGP SSSVVSKTGT 240 ELVQIQQPAT ETEVVDEGKR KEREEPADDT ERRREKINEK MKALQELIPR CNKTDKASML 300 EDAIEYVKSL QMQIQMMSTG GGGMMPMMYT PDMQRFMPHT AMGMMGMNRP PFIPFPAAPF 360 PRPAHMAGLA PSYPAPRYPF PNVPGFDPSR VHLTSQQPEQ VPNQPQFPGY LNPYSQFVGL 420 QQMQQPPPLQ NQTTSQLSFS QPNSSKEPED QDHKPTGWLM SGVKKRISTP SRSTKLKIYT 480 EK

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

METRGEDDLV ELLWKSGQVV RSSQTQRPSV PPPILRGSGS GSGSGGGEEP NAPLPQPPPR  60
LHSHHHQPYD QNLFIREDEM ASWLHHHPLP EDESGSSHLF YSNVVSIPFT QPQGSVSLTP  120
PSLPPPTPAA ASGMYTQTAA VRSMGQTIAG TRAENFFNFS RLRGRVETAP PWVQVVGDST  180
QVGSNATPTS SATESCLTPA TVTGGVSQTF AVPPSLSRKA IETVCEIAGP SSSVVSKTGT  240
ELVQIQQPAT ETEVVDEGKR KEREEPADDT ERRREKINEK MKALQELIPR CNKTDKASML  300
EDAIEYVKSL QMQIQMMSTG GGGMMPMMYT PDMQRFMPHT AMGMMGMNRP PFIPFPAAPF  360
PRPAHMAGLA PSYPAPRYPF PNVPGFDPSR VHLTSQQPEQ VPNQPQFPGY LNPYSQFVGL  420
QQMQQPPPLQ NQTTSQLSFS QPNSSKEPED QDHKPTGWLM SGVKKRISTP SRSTKLKIYT  480
EK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676753266

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129259.1	0.0	PREDICTED: putative transcription factor bHLH056
Swissprot	Q9SVU7	1e-128	BH056_ARATH; Putative transcription factor bHLH056
TrEMBL	A0A0D3A3N7	1e-167	A0A0D3A3N7_BRAOL; Uncharacterized protein
STRING	Bo1g017090.1	1e-168	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9041	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	2e-89	bHLH family protein