PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752788
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 511aa    MW: 56505.6 Da    PI: 8.3985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752788genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05100122123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  676752788 100 FVCEICNKGFQRDQNLQLHRRGH 122
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-599122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.49E-699122No hitNo description
PROSITE profilePS5015710.949100122IPR007087Zinc finger, C2H2
PfamPF121718.2E-5100122IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM00355160142172IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.49E-6172197No hitNo description
SMARTSM00355180177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MTSKDMLLHQ QVQQQQQQEE NMSNLTSASG DQASVSSGNR TEASGSNYFP HHQQQQEEQQ  60
QFFVPESQPQ KKRRNQPGNP DPESEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLKQ RSNKEVIRKK VYVCPEANCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD  180
KCSKKYAVQS DCKAHSKTCG TKEYRCDCGT LFSRRDSFIT HRAFCEALAE ETAREVVLPQ  240
NQNHQPNPLM IHQSSSHHNH QAQPNINVSS STSSSHNIIN SLHFETNNNG TNNSNSISNH  300
LHTFPMKKEQ QQSNDPIINY HHHGIPPWLA PQPQGLTSSN PNPSNGGGGG GLFSVAPSPA  360
MSATALLQKA AQMGSTKTPP LPPTTDLERP AHHNNLTTTM AAMMTSPSGF ISSDNNNQVL  420
FQDYNASGFD HHAGEEAFDT FGGFLRTNAD TTTSGSDKNK SGGRGTGEGL TRDFLGLRPL  480
MSHNEILSFA GLGNCINGAT SDQLHPKPWQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-32173241371Zinc finger protein JACKDAW
5b3h_F9e-32173241371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126139KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752788
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407162.20.0protein indeterminate-domain 11
RefseqXP_024015104.10.0protein indeterminate-domain 11
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A1J3FCK10.0A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRINGXP_006407162.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]