PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676752724 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31851.8 Da PI: 8.894 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163 | 1.1e-50 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+d+elv++yL k+ +++ + ++ + evd++k+ePwd+p++++ + kewyf+s++d+kyatg+r+nrat++gyWkatgkd+++ + +g+l 676752724 18 LPPGFRFHPRDDELVCDYLMKRtIRSLQQPV--LLIEVDLNKCEPWDIPQSARVGGKEWYFYSQKDRKYATGQRTNRATATGYWKATGKDRAIQR-NGSL 114 79*****************988245555555..699*************9889999*************************************99.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg++ktLvfy+grapkg+k+dWvmhe+rl 676752724 115 VGMRKTLVFYRGRAPKGRKADWVMHEFRL 143 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-58 | 10 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.12 | 18 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-25 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEVKEESKGS ISMVEANLPP GFRFHPRDDE LVCDYLMKRT IRSLQQPVLL IEVDLNKCEP 60 WDIPQSARVG GKEWYFYSQK DRKYATGQRT NRATATGYWK ATGKDRAIQR NGSLVGMRKT 120 LVFYRGRAPK GRKADWVMHE FRLQGSYLHH SLNSPKEEWV LCRVFHKNSN EVDRDSNMRS 180 CSDETASALM DTYINFDHHH IINQQVPCFS NLSQNQTNQS GLVSKSPNPL SINPSSDQMV 240 LRALLSQLTK SSKDSSYGEG SSESQLTDVG IPSHDAWKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 14 | 169 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676752724 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 4e-85 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 4e-85 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407275.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-136 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1J3GCU0 | 0.0 | A0A1J3GCU0_NOCCA; NAC domain-containing protein 21/22 | ||||
STRING | XP_006407275.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-165 | NAC family protein |