PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676752310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 31780.9 Da PI: 7.5051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 110 | 160 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ k++ge 676752310 110 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAHKIRGE 160 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.61E-35 | 109 | 169 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-23 | 110 | 168 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.064 | 110 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 110 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-38 | 110 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 111 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-14 | 111 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MEIASNTNGC VEEFMKALEP FLKVTSPSSS PSLSRPTPVT PDNQALPVYF QTGPIGLNQL 60 TPTQILQIQT ELHLRQNQAR RRGCSGNNLN LLNAKPIPMK KTDVTRPTKL YRGVRQRHWG 120 KWVAEIRLPK NRTRLWLGTF ETAEEAALAY DQAAHKIRGE NARLNFPNTA RRGAFKQTLS 180 PSVNAKIESI CNSSDLPLPD LKKPAKTEEG FFGFHYTGPK LEQEREVPDN FGYGPGSSPE 240 SDVTLLDFSS EWMKEDESFF MGLQKFPSLE IDWDAIDELS GSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 109 | 167 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00585 | DAP | Transfer from AT5G65130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676752310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613888.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF057-like | ||||
Swissprot | Q9FJQ2 | 1e-130 | ERF57_ARATH; Ethylene-responsive transcription factor ERF057 | ||||
TrEMBL | A0A0D2ZR39 | 1e-162 | A0A0D2ZR39_BRAOL; Uncharacterized protein | ||||
STRING | Bo00790s010.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13499 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65130.1 | 1e-103 | ERF family protein |
Publications ? help Back to Top | |||
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