PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752304
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family EIL
Protein Properties Length: 530aa    MW: 60472 Da    PI: 4.6344
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752304genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3446.62e-136354171354
                XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn...........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                ++lkkrmwkd++l+ +lk++kk +   +++ +++ +s+           ++ e+++rkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkpv+g+sd
  676752304  35 DDLKKRMWKDRNLMSKLKQQKKGNHD-HSV-LSSPSSStsasssssaivRRAEASSRKKMARSQDSVLKYMMKIMEVCKARGFVYGIVPEKGKPVTGSSD 132
                79********************9764.443.333332234455669999*************************************************** PP

                XXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT. CS
       EIN3  90 sLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg. 185
                sLr+WWke+v+fd+++p+a+s+y   +a++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWP G+elwwge+g 
  676752304 133 SLRRWWKENVQFDQTAPNAVSDYltsAAAQLISSSESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPWWPDGTELWWGEQGa 229
                *************************98999998876666...9********************************************************8 PP

                --TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXXXXXXXXXXX CS
       EIN3 186 lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkvtlsceqked 283
                ++ ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm ake++++++vlnqee+++++++ +   ++ ++q+p+  +s +q+  
  676752304 230 AAFKHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMIAKETDTWSRVLNQEEALLKRLKISddDEEDEDQEPARLISLDQDSS 329
                899999********************************************************************99995433556699999999998887 PP

                XX.....XXXXXX.XXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
       EIN3 284 ve.....gkkeskikhvqavktta..............gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                 +      ++++ ++ ++++k+++               +++ +krk +++e++ v s+  ++tcq+s++++s+++l+f dkn ++ +e+
  676752304 330 LNdrflaAQDQECVRFMRKDKRADqesslddcflvdqnLEQLGSKRKGEFVEQEVVLSN--VYTCQNSSCPSSDVSLGFVDKNLRTGHEM 417
                7779998666666677888888779999*******99778899**************99..7************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.6E-12335298No hitNo description
Gene3DG3DSA:1.10.3180.101.9E-67174305IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.32E-58176301IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MVEVQDLEPL SPIHDDEDDD YEDEYNRYGE EISYDDLKKR MWKDRNLMSK LKQQKKGNHD  60
HSVLSSPSSS TSASSSSSAI VRRAEASSRK KMARSQDSVL KYMMKIMEVC KARGFVYGIV  120
PEKGKPVTGS SDSLRRWWKE NVQFDQTAPN AVSDYLTSAA AQLISSSESL DPNSYIHMLH  180
ELQDTTLGSL LSALMQHCVP PQRRFPLEKG LAPPWWPDGT ELWWGEQGAA AFKHGPPPYR  240
KPHDLRKAWK VSVLAAVIKH MSPNLERVRR LARQSKCLQD KMIAKETDTW SRVLNQEEAL  300
LKRLKISDDD EEDEDQEPAR LISLDQDSSL NDRFLAAQDQ ECVRFMRKDK RADQESSLDD  360
CFLVDQNLEQ LGSKRKGEFV EQEVVLSNVY TCQNSSCPSS DVSLGFVDKN LRTGHEMECV  420
YGTQEPVNQS SVSSDGFVRS MTTSDDDYSA SSKAKDTRDY QSQDGNWLDY LWFERLHDLN  480
VSDQGFEDQT TAVDLNQLPD HADSNQTMNE GDFSLWDMGC EDRDIYMSQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-571743041130Protein ETHYLENE INSENSITIVE 3
4zds_B4e-571743041130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAB4938140.0AB493814.1 Arabidopsis thaliana At5g65100 mRNA for hypothetical protein, partial cds, clone: RAAt5g65100.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394078.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLV4KJG90.0V4KJG9_EUTSA; Uncharacterized protein
STRINGXP_006394078.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]