PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676752152

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 325aa MW: 35960 Da PI: 7.0493

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676752152	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.3	2.8e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kf +vhk+FGasnv kll++l ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql+++l+ +k+e 676752152 7 PCAACKFLRRKCTQECVFAPYFPPDQPHKFSYVHKVFGASNVAKLLNELAANQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQLQHDLENAKKE 106 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	7.0E-101	4	319	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	26.946	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.3E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPHKFSYVH KVFGASNVAK LLNELAANQR 60 EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQLQHDL ENAKKELASY VGPQAMLPIL 120 QPQHPQPHFM SLPQRPSSSS SSASVLTQQQ HHHNLLPMMA IPTGQLYHQQ QQQIFEAQQL 180 AAVNAVAREQ QNEMFRAYGG GGSNSPHHHQ NQSQVEILRF DNGFDSPTGS VTVTGFNQLS 240 SGGTAVTGMS PSLALGGNFV DSPPTTDNYH PDQQLHHHQQ QQHHEAQLFI PTQSSQPLTL 300 QTQETQTQPN SESEEGKRSI IGSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-48	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	9e-48	3	110	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676752152

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013653566.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_013653567.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_013653569.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_013653570.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-160	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A3P6AVY7	0.0	A0A3P6AVY7_BRACM; Uncharacterized protein
STRING	Bra012112.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-143	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]