PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751824
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25930.6 Da    PI: 8.0422
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751824genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.5e-225098149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k+i ++s+rqvtfskRr+g++KKA ELSvL +a++ +i fs +g++y +
  676751824 50 KQITEESRRQVTFSKRRKGLFKKAAELSVLSGAQIGIITFSRRGRIYSF 98
               68999******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.03442102IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-2742101IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-2343117IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-204464IPR002100Transcription factor, MADS-box
PfamPF003191.7E-215298IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-206479IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-2079100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEDGEASSTI YLPFTEQNPL QIPKVPVNKK EETKLQNPKT TKGRQKIEIK QITEESRRQV  60
TFSKRRKGLF KKAAELSVLS GAQIGIITFS RRGRIYSFGN VDTLIEKYFR KTPVTLKSHP  120
GGDETNQLED VDGIKWWERA VENVPEEEMG EYMTALSGLR ENLWTRICQL GGDRLVLMNA  180
PALPNPMAAI EWKMMDENLT VKNDHQGQAG NDGCIDFAGV PFLSQNCRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751824
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013699573.11e-106MADS-box transcription factor 23-like
TrEMBLA0A0D3D0381e-103A0A0D3D038_BRAOL; Uncharacterized protein
STRINGBo6g115840.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-85M-type_MADS family protein