PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751634
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 666aa    MW: 76157.3 Da    PI: 4.7266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751634genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073637656221
                EETTTTEEESSHHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                +C  Cg+ F ++ +L +Hi 
  676751634 637 ECDRCGEEFDSRTQLFKHIA 656
                5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.9E-23688IPR001623DnaJ domain
SuperFamilySSF465659.42E-237114IPR001623DnaJ domain
SMARTSM002716.1E-201174IPR001623DnaJ domain
CDDcd062571.29E-141271IPR001623DnaJ domain
PROSITE profilePS5007619.1861282IPR001623DnaJ domain
PfamPF002263.3E-201379IPR001623DnaJ domain
PRINTSPR006252.7E-141432IPR001623DnaJ domain
PRINTSPR006252.7E-143247IPR001623DnaJ domain
PRINTSPR006252.7E-145474IPR001623DnaJ domain
PROSITE patternPS0063605978IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.98E-14302354No hitNo description
SMARTSM004511.4E-7311345IPR003604Zinc finger, U1-type
PfamPF121713.7E-10313339IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82314338IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280316338IPR007087Zinc finger, C2H2
SMARTSM003552.6636660IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577636665IPR007087Zinc finger, C2H2
PROSITE patternPS000280638660IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAASSSRSEK RCLYEVLGIS KESSADEIRS SYRRLALQRH PDKLIKAGGI SESEATAQFQ  60
ELVHAYEVLS DPKERAWYDS HRSQILFADH GSSGGSKSGG MPGGSVPDLF AFFSATVYSG  120
YSDTGKGFYK VYFDVFNSVY LNEINFARKL GLSLDSVREA PIMGNLESPY SQVTAFYNYW  180
LGFSTVMDFC WVDEYDAMAG PNRRYRRKME EENKKVRKKA KREYNETVRG LAAFVKKRDK  240
RVIDMMVKKN AEMELKKAEE RERKKKMDKE RLERAMNYEE PDWAKAQDGE EEGAGFNVAE  300
EVDDDDAKKK NEQLYCIVCS KKFKSEKQWK NHEQSKKHKE KVAELRASFS DVEDEKDEEE  360
DEEEIDEVIE TVDEIHEKLR EGLNMDDEVE EVEEKDGEEE DVGEADESDD EYFMAEEDVK  420
ASNQSEDEDV KASSQSEDED DDDEMSLLKK MVSGQKKKRN NFVSRKEDEV QVEIESDPAE  480
FSEFDNQGNT ARNRKGKKER NKWTAAKDTT DDSNKVQLPA DDGNTTDDNV NATDSASGAF  540
EESQKDEADP MEYDNRKSTG RRRRSKKGKD KNNIGGLTEK SNEADNTQYR NGGMEESHSE  600
TFEGRSEYIE HKKAPRSKKS TRGMKSKGTA KKTSNNECDR CGEEFDSRTQ LFKHIADTGH  660
ATVKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A2e-111081268DNAJ
1xbl_A2e-111081268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221KKVRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390445.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLV4M9A40.0V4M9A4_EUTSA; Uncharacterized protein
STRINGXP_006390445.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein